Locus 2513

Sequence ID 3R_DroMel_CAF1
Location 6,852,150 – 6,852,241
Length 91
Max. P 0.640221
window4116

overview

Window 6

Location 6,852,150 – 6,852,241
Length 91
Sequences 6
Columns 91
Reading direction forward
Mean pairwise identity 89.23
Mean single sequence MFE -24.17
Consensus MFE -20.30
Energy contribution -20.30
Covariance contribution 0.00
Combinations/Pair 1.24
Mean z-score -1.78
Structure conservation index 0.84
SVM decision value 0.22
SVM RNA-class probability 0.640221
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6852150 91 + 27905053
UUAUUUCCCUUGUCCCUUCGUUAUAGUUUAGUUUUCUGUGCCGGCUUAAAGUCGUCGCUAAUGAACUUGUUGAGCGGGAAAAGGAUAGACA
.......((((.((((((((....((((((.......(((.((((.....)))).)))...))))))...)))).)))).))))....... ( -25.10)
>DroSec_CAF1 6579 91 + 1
UUAUUUCCCUUGUCCCUUCGUUGUAGUUUAGUUUUCUGUGUCGGCUUAAAGUCGUCGCUAAUGAACUUGUUGAGCGGGAAAAGGAUAGACA
.......((((.((((((((....((((((.......(((.((((.....)))).)))...))))))...)))).)))).))))....... ( -26.20)
>DroSim_CAF1 8492 91 + 1
UUAUUUCCCUUGUCCCUUCGUUAUAGUUUAGUUUUCUGUGCCGGCUUAAAGUCGUCGCUAAUGAACUUGUUGAGCGGGAAAAGGAUAGACA
.......((((.((((((((....((((((.......(((.((((.....)))).)))...))))))...)))).)))).))))....... ( -25.10)
>DroEre_CAF1 6652 91 + 1
UCAUUUCCCUUGUCCCUUCGUUUCAGUUUAGUUUUCUGUGCCGGCUUAAAGUCGUCGCUAAUGAACUUGUUGAGCGGGAAAAGGAUAGACA
.......((((.((((((((....((((((.......(((.((((.....)))).)))...))))))...)))).)))).))))....... ( -24.40)
>DroYak_CAF1 6726 91 + 1
UUGUUUCCCUUGUCCCUUCGUUAUAGUUUAGUUUUCUGUGCCGGCUUAAAGUCGUCGCUAAUGAACUUGUUGAGCGGGAAAAGGAUAGACA
.(((((.((((.((((((((....((((((.......(((.((((.....)))).)))...))))))...)))).)))).))))..))))) ( -26.60)
>DroAna_CAF1 6425 87 + 1
UU----UUAUUUUUUUUUUGUUAGAUUUUUUUUUACUGUUCCGACUUAAAGUCACCGCUAAUGAACUUGUUGAGCGGGAAAAAGAUAGAUG
.(----(((((((((((.........................(((.....))).((((((((......))).))))))))))))))))).. ( -17.60)
>consensus
UUAUUUCCCUUGUCCCUUCGUUAUAGUUUAGUUUUCUGUGCCGGCUUAAAGUCGUCGCUAAUGAACUUGUUGAGCGGGAAAAGGAUAGACA
.......((((.((((((((....((((((.......(((.((((.....)))).)))...))))))...)))).)))).))))....... (-20.30 = -20.30 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:18 2006