Locus 2512

Sequence ID 3R_DroMel_CAF1
Location 6,848,959 – 6,849,061
Length 102
Max. P 0.821613
window4115

overview

Window 5

Location 6,848,959 – 6,849,061
Length 102
Sequences 6
Columns 118
Reading direction reverse
Mean pairwise identity 76.40
Mean single sequence MFE -22.35
Consensus MFE -10.28
Energy contribution -9.86
Covariance contribution -0.42
Combinations/Pair 1.13
Mean z-score -2.17
Structure conservation index 0.46
SVM decision value 0.68
SVM RNA-class probability 0.821613
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6848959 102 - 27905053
UUUGGCGU--GACAGCAGC-AUUUUGUUGAUUUAUUUAAAUUGUGUGUGAAAAAUCGAAAUCGAAAUG------------GAAAU-GACAGGCAAUGCAAUUAAAAUUAAUUGCAACA
....((.(--(.((....(-(((((((((((((.((((.........)))))))))))...)))))))------------....)-).)).))..((((((((....))))))))... ( -20.90)
>DroVir_CAF1 4858 93 - 1
UU-------------UACCAUUUUUGUUUAUUCAUUCAAAUUGCGUGUGAAAAAUCGAAAACGCAAUG------------AAAAUGGACAAGCAAUGCAAUUAAAAUUAAUUGCAACG
..-------------........((((((.((((((...(((((((.(((....)))...))))))).------------..)))))).))))))((((((((....))))))))... ( -26.00)
>DroPse_CAF1 4845 115 - 1
UUCGUUGCCGGGCAGC-GC-UUUUUGUUGAUUUAUUCAAAUUGUGUGUGAAAAAUCGAAAACGAAAUGGAAAUGGAAAUGAAAAU-GACAGGCAAUGCAAUUAAAAUUAAUUGCAACA
...((((((...((..-..-((((..((......((((..((((...(((....)))...))))..))))......))..)))))-)...))))))(((((((....))))))).... ( -22.80)
>DroWil_CAF1 3732 101 - 1
AU---------------UC-UUUCUGUUGAUUUAUUCAAAUUGUGUGUGAAAAAUCGAAAACGAAAUCGAAAUGCGAAUGCAAAU-GACAUGCAAUGCAAUUAAAAUUAAUUGCAACA
..---------------..-......((((.....))))(((((((((.(....((((........))))..(((....)))..)-.)))))))))(((((((....))))))).... ( -20.50)
>DroMoj_CAF1 5538 93 - 1
UU-------------UGCCAUUUAUGUUUAUUUAUUCAAAUUGUGUGUGAAAAAUCGAAAACGCAAUG------------AAAAUCGACAAGCAACGCAAUUAAAAUUAAUUGCGGUG
..-------------.(((.....(((((.((.(((...(((((((.(((....)))...))))))).------------..))).)).)))))..(((((((....)))))))))). ( -21.10)
>DroPer_CAF1 5006 115 - 1
UUCGUUGCCGGGCAGC-GC-UUUUUGUUGAUUUAUUCAAAUUGUGUGUGAAAAAUCGAAAACGAAAUGGAAAUGGAAAUGAAAAU-GACAGGCAAUGCAAUUAAAAUUAAUUGCAACA
...((((((...((..-..-((((..((......((((..((((...(((....)))...))))..))))......))..)))))-)...))))))(((((((....))))))).... ( -22.80)
>consensus
UU_____________C_GC_UUUUUGUUGAUUUAUUCAAAUUGUGUGUGAAAAAUCGAAAACGAAAUG____________AAAAU_GACAGGCAAUGCAAUUAAAAUUAAUUGCAACA
........................................((((.(((.......................................))).))))((((((((....))))))))... (-10.28 =  -9.86 +  -0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:17 2006