Locus 2511

Sequence ID 3R_DroMel_CAF1
Location 6,847,954 – 6,848,056
Length 102
Max. P 0.845968
window4114

overview

Window 4

Location 6,847,954 – 6,848,056
Length 102
Sequences 6
Columns 112
Reading direction reverse
Mean pairwise identity 77.34
Mean single sequence MFE -25.43
Consensus MFE -16.24
Energy contribution -16.68
Covariance contribution 0.45
Combinations/Pair 1.32
Mean z-score -1.66
Structure conservation index 0.64
SVM decision value 0.77
SVM RNA-class probability 0.845968
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6847954 102 - 27905053
---UUUCAUUGUUUGUUACGUUUGCUGCGGUUGGCCGCGCAUUUUAUGCGUUAAUUUAAAGGCGUGACAUUUCAGUUCAGCCCAAAUGCGAUAAUA-------AAAAAGGGA
---....((((..((((((((((...((((....))))((((...))))..........))))))))))...))))....(((.............-------.....))). ( -25.17)
>DroVir_CAF1 3372 105 - 1
CAGUUACUGUUGUUUUUUCAUUUAUUGUGGUUGGCCGCGAAUUUUAUGCAUUAAUUUAAAGGCUUGACAUUUCAGUUAAGCCAAAAUGAAAUGAAU-------AUGAAGUAA
...(((((..(((((((((((((.((((((....))))))....................((((((((......)))))))).)))))))).))))-------)...))))) ( -30.10)
>DroPse_CAF1 3243 101 - 1
---UGUU-GUUGUUGCAACAUUUACUGCGGUUGGCCGCGCAUUUUGUGCGUUAAUUUAAAGGCGUGACAUUUCAGUUAAGCCAAAAUGCGACGAUA-------AAAACUGGA
---..((-(((((((((((.......((((....))))((((...)))))))........(((.((((......)))).))).....)))))))))-------)........ ( -31.10)
>DroMoj_CAF1 3803 112 - 1
GAAUCGCUGUUGUUUUUCCAUUUACUGCGGUUGGCCGCGUAUUUUAUGCAUUAAUUUAAAGGCAUGACAUUUCAGUUAAGCCAAAAUGCAAUAAAAAUAUCAAAUGAAAUAA
(((..((....))..)))(((((...((((....))))(((((((.((((((........(((.((((......)))).)))..))))))...))))))).)))))...... ( -22.90)
>DroAna_CAF1 2231 99 - 1
---UUUCA---GUUGUUAUAUUUUCUGCGGUUGGCCGCGUAUUUUAAGCGUUAAUUUAAAGGCGUGACAUUUCAGUUAAACCCAAAUGAAAUAAUA-------AAAAAAAGG
---(((((---.(((...........((((....))))......................((..((((......))))..))))).))))).....-------......... ( -15.70)
>DroPer_CAF1 3407 98 - 1
---UGU----UGUUGCAACAUUUACUGCGGUUGGCCGCGCAUUUUGUGCGUUAAUUUAAAGGCGUGACAUUUCAGUUAAGCCAAAAUGCGAUGAUA-------AAAACUGGA
---(((----..(((((((.......((((....))))((((...)))))))........(((.((((......)))).))).....))))..)))-------......... ( -27.60)
>consensus
___UUUC_GUUGUUGUUACAUUUACUGCGGUUGGCCGCGCAUUUUAUGCGUUAAUUUAAAGGCGUGACAUUUCAGUUAAGCCAAAAUGCAAUAAUA_______AAAAAAGGA
............(((((.(((((...((((....))))((((...))))...........(((.((((......)))).))).))))).))))).................. (-16.24 = -16.68 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:16 2006