| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,843,501 – 6,843,591 |
| Length | 90 |
| Max. P | 0.947465 |
| Location | 6,843,501 – 6,843,591 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 90 |
| Reading direction | forward |
| Mean pairwise identity | 93.67 |
| Mean single sequence MFE | -35.48 |
| Consensus MFE | -30.20 |
| Energy contribution | -30.00 |
| Covariance contribution | -0.20 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.85 |
| SVM decision value | 1.37 |
| SVM RNA-class probability | 0.947465 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6843501 90 + 27905053 GAUAGUGGGAGGUGGGCAAGUGCACGCCAGGUGGACAUGGCAAAGAAAUGCUAAUGUCGCUCUUGCCGCUGCUUUUGCUCCUCUGCUGCG ....(..(.(((.(((((((.(((((.((((.((((((((((......)))).))))).).)))).)).))).))))))).))).)..). ( -37.30) >DroSec_CAF1 5658 90 + 1 AAUAGUGGGAGGUGGGCAAGUGCACGCCAGGUGGACAUGGCAAAGAAAUGCUAAUGUCGCUCUUGCCGCUGCUUCUGCUCCUCUGCUGCG ....(..(.(((.(((((...(((((.((((.((((((((((......)))).))))).).)))).)).)))...))))).))).)..). ( -34.90) >DroSim_CAF1 5666 90 + 1 GAUAGAGGGAGGUGGGCAAGUGCACGCCAGGUGGACAUGGCAAAGAAAUGCUAAUGUCGCUCUUGCCGCUGCUCCUGCUCCUCUGCUGCG ..((((((((((.(((((((.((.(((...)))(((((((((......)))).))))))).)))))).)....))).).))))))..... ( -34.40) >DroEre_CAF1 5749 90 + 1 GGCGGUGGGAGGUGGACAAGUGCAGGCCAGGUGGACAUGGCAAAGAAAUGCUAAUGUCGCUCUUGCCGCUGCUUCUGCUCCUCUGCUGCA .((((..(.(((.(.(.((((((.(((.(((.((((((((((......)))).))))).).)))))))).)))).).).))))..)))). ( -36.70) >DroYak_CAF1 5987 90 + 1 GGCGGUGGGAGGUGGACAAGUGCAUGCCAGGUGGACAUGGCAAAGAAAUGCUAAUGUCGCUCUUGCCGCUGCUUUUGCUCCUCUGCUGUG (((((.(((((((((.((((.((....(....)(((((((((......)))).))))))).)))))))))((....)))))))))))... ( -34.10) >consensus GAUAGUGGGAGGUGGGCAAGUGCACGCCAGGUGGACAUGGCAAAGAAAUGCUAAUGUCGCUCUUGCCGCUGCUUCUGCUCCUCUGCUGCG ..(((((((((((((.((((.((.(((...)))(((((((((......)))).))))))).)))))))))((....))))))..)))).. (-30.20 = -30.00 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:14 2006