| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,841,503 – 6,841,604 |
| Length | 101 |
| Max. P | 0.756621 |
| Location | 6,841,503 – 6,841,604 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 82.57 |
| Mean single sequence MFE | -41.28 |
| Consensus MFE | -25.63 |
| Energy contribution | -27.07 |
| Covariance contribution | 1.43 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.62 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.756621 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6841503 101 + 27905053 GGGCAGCCAUUGUGCGACGGCA-UUGGAGGCCAACGGGGCGAAAA-----------GUGGGCGAAAGCCCUGGCUUUAUGUGGCCACUAAUGCAUAAUAUUCAGCGUUGCC-UU (((((((..(((.......(((-((((.(((((..(((((.(...-----------..((((....))))).)))))...))))).)))))))........))).))))))-). ( -43.96) >DroSec_CAF1 3675 101 + 1 GGGCAGCCAUUGUGCGCCGGCA-UUGGAGGCCAACGGGGCGAAAA-----------GUGGGCGAAAGCCCUGGCUUUAUGUGGCCACUAAUGCAUAAUAUUCAGCGUUGCC-UU (((((((..(((.......(((-((((.(((((..(((((.(...-----------..((((....))))).)))))...))))).)))))))........))).))))))-). ( -43.96) >DroSim_CAF1 3693 101 + 1 GGGCAGCCAUUGUGCUCCGGCA-UUGGAGGCCAACGGGGCGAAAA-----------GUGGGUGAAAGCCCUGGCUUUAUGUGGCCACUAAUGCAUAAUAUUCAGCGUUGCC-UU (((((((..(((.......(((-((((.(((((..(((((.(...-----------..((((....))))).)))))...))))).)))))))........))).))))))-). ( -40.66) >DroEre_CAF1 3756 112 + 1 GGGCACCCAUUGUGCGCCGGCA-UUGGAGGCCAAGAGGACGAAAAGUGGGCAAAAAGUGGGCGAAAGCCGUGGCUUUAUGUGCCCACUAAUGCAUAAUAUUCAGCGUUGCC-UU .(((..(((..((((....)))-))))..)))..((((.(....((((((((.(((((.(((....)))...)))))...))))))))(((((..........))))))))-)) ( -44.90) >DroYak_CAF1 3907 112 + 1 GGGCAGCCAUUGUGCGCCGGCA-UUGGAGGCCAAGAGGGCGAAAAGUGGGCCAAAAGUGGGCGAAAGCCCUGGCUUUGUGUGGCCACUAAUGCAUAAUAUUCAGCGUUGCC-UU ((((((((((((((((((..(.-((((...)))))..)))....(((((.((((((((((((....))))..)))))...))))))))...))))))).....).))))))-). ( -47.10) >DroPer_CAF1 4656 92 + 1 GGGCAGCCAUUGUGCGGUGGGUGUUUGGGGGCUUGGGGGCU----------------UGGG------GGUUGGGUUUAUGUGGCCACUAAUGCAUAAUAUUCAACGUUGCCGUU .((((((((((....)))).((((((((.((((...(((((----------------..(.------..)..)))))....)))).)))).))))..........))))))... ( -27.10) >consensus GGGCAGCCAUUGUGCGCCGGCA_UUGGAGGCCAACGGGGCGAAAA___________GUGGGCGAAAGCCCUGGCUUUAUGUGGCCACUAAUGCAUAAUAUUCAGCGUUGCC_UU .((((((((((((((...(((........)))...((.....................((((....))))(((((......)))))))...))))))).....).))))))... (-25.63 = -27.07 + 1.43)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:11 2006