Locus 2506

Sequence ID 3R_DroMel_CAF1
Location 6,841,085 – 6,841,177
Length 92
Max. P 0.527273
window4108

overview

Window 8

Location 6,841,085 – 6,841,177
Length 92
Sequences 6
Columns 97
Reading direction reverse
Mean pairwise identity 82.87
Mean single sequence MFE -15.85
Consensus MFE -9.94
Energy contribution -10.72
Covariance contribution 0.78
Combinations/Pair 1.07
Mean z-score -1.96
Structure conservation index 0.63
SVM decision value -0.01
SVM RNA-class probability 0.527273
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6841085 92 - 27905053
UCCUCAUCGCCUGCCGCUUUUGACUUACUUCUGCUGAUUGCACUUGUUUAAGUGGCAACUUUUUCAG-----CACUUUAUGCUCCCGCUACCUUCUA
........((.((((((((..(((.......(((.....)))...))).))))))))........((-----((.....))))...))......... ( -17.70)
>DroGri_CAF1 129823 83 - 1
-GCUCAACUCCU-CCA-CUUUGACUUACUUCUACUGAUUGCACUUCUUUAAGUGGCAACUUUUU-AGCUCUCAUUUCUGUU--------GCUUUC--
-...........-.((-(((.((......((....)).......))...)))))(((((.....-.............)))--------))....-- (  -8.79)
>DroSec_CAF1 3257 92 - 1
UCCUCAUCGCCUGCCGCUUUUGACUUACUUCUGCUGAUUGCACUUGUUUAAGUGGCAACUUUUUCAG-----CACUUUAUGCGCCCGCUACCUUCUC
........((.((((((((..(((.......(((.....)))...))).)))))))).........(-----((.....)))....))......... ( -17.60)
>DroSim_CAF1 3275 92 - 1
UCCUCAUCGCCUGCCGCUUUUGACUUACUUCUGCUGAUUGCACUUGUUUAAGUGGCAACUUUUUCAG-----CACUUUAUGCGCCCGCUACCUUCUC
........((.((((((((..(((.......(((.....)))...))).)))))))).........(-----((.....)))....))......... ( -17.60)
>DroEre_CAF1 3339 92 - 1
UUCUCAUCGCCUGCCACUUUUGACUUACUUCUGCUGAUUGCACUUGUUUAAGUGGCAACUUUUUCAG-----CACUUUAUGCUCCCGCUACCUUCUC
........((.((((((((..(((.......(((.....)))...))).))))))))........((-----((.....))))...))......... ( -18.10)
>DroAna_CAF1 3101 84 - 1
UUCUCAUCGUCAGCCGCUUUUGACUUACUUCUGCUGAUUGCACUUGUUUAAGUGGCAACUUUUUCAG-----CACUUUAUGCCCC--------UUGC
........(((((......))))).......((((((((((((((....)))).)))).....))))-----))...........--------.... ( -15.30)
>consensus
UCCUCAUCGCCUGCCGCUUUUGACUUACUUCUGCUGAUUGCACUUGUUUAAGUGGCAACUUUUUCAG_____CACUUUAUGCGCCCGCUACCUUCUC
...........((((((((..(((.......(((.....)))...))).))))))))........................................ ( -9.94 = -10.72 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:10 2006