Locus 2505

Sequence ID	3R_DroMel_CAF1
Location	6,838,080 – 6,838,176
Length	96
Max. P	0.500000

overview

Window 7

Location	6,838,080 – 6,838,176
Length	96
Sequences	4
Columns	96
Reading direction	reverse
Mean pairwise identity	83.77
Mean single sequence MFE	-29.70
Consensus MFE	-20.54
Energy contribution	-21.48
Covariance contribution	0.94
Combinations/Pair	1.09
Mean z-score	-1.47
Structure conservation index	0.69
SVM decision value	-0.06
SVM RNA-class probability	0.500000
Prediction	OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6838080 96 - 27905053
CCCGCAUCCUUUUCCUGAAAUGAAAUUCCAAUUAUAGAGCGCUGCGCUGUUGACACUCGCGAUGCGCGGUGCUGUGGGGGGAAACGGAGAGAGGAA
......(((((((((............((.....((.((((((((((.((((.(....))))))))))))))).)).))(....)))).)))))). ( -34.40)
>DroSec_CAF1 350 95 - 1
CCCGCAUCCUUUUCCUGAAAUGAAAUUCCAAUUAUAGAGCGCUGCGCUGUUGACACUCGCGAUGCGCGGUGCUGUGGG-GGAAACGGAGAGAGGAA
.((...(((.(((((((((......)))......((.((((((((((.((((.(....))))))))))))))).)).)-))))).)))....)).. ( -34.00)
>DroSim_CAF1 346 95 - 1
CCCGCAUCCUUUUCCUGAAAUGAAAUUCCAAUUAUAGAGCGCUGCGCUGUUGACACUCGCGAUGCGCGGUGCUGUGGG-GGAAACGGAGAGAGGAA
.((...(((.(((((((((......)))......((.((((((((((.((((.(....))))))))))))))).)).)-))))).)))....)).. ( -34.00)
>DroAna_CAF1 341 76 - 1
CCCGCAUCCUUUUCCUGAAAUGAAAUUCCAAUUAUAAAACGCCACGAUGUUUACGCUCAAGAUGAG-GGUGCAGUGG-------------------
...((((((((.((.(((..((......))......(((((......)))))....))).)).)))-))))).....------------------- ( -16.40)
>consensus
CCCGCAUCCUUUUCCUGAAAUGAAAUUCCAAUUAUAGAGCGCUGCGCUGUUGACACUCGCGAUGCGCGGUGCUGUGGG_GGAAACGGAGAGAGGAA
(((((.....((((.......))))............((((((((((.((((.......))))))))))))))))))).................. (-20.54 = -21.48 +   0.94)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:09 2006