Locus 2503

Sequence ID 3R_DroMel_CAF1
Location 6,835,659 – 6,835,752
Length 93
Max. P 0.835488
window4103

overview

Window 3

Location 6,835,659 – 6,835,752
Length 93
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 82.83
Mean single sequence MFE -29.73
Consensus MFE -19.65
Energy contribution -20.27
Covariance contribution 0.61
Combinations/Pair 1.12
Mean z-score -2.92
Structure conservation index 0.66
SVM decision value 0.73
SVM RNA-class probability 0.835488
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6835659 93 - 27905053
ACUUGGCCAACUUUGGCACAGUGUCAACUUGUCUGGACUCCAGACAACACAGUC---------------GCAUCUCUGCGACGCUGAAUGAUUC---AUUCAUCAUUU---------GCU
...((((((....)))).))((((.....(((((((...))))))))))).(((---------------(((....))))))((.(((((((..---....)))))))---------)). ( -32.70)
>DroSec_CAF1 94534 92 - 1
ACUUGGCCAACU-UGGCACAGUGUCAACUUGUCUGGACUCCAGACAACACAGUC---------------GCAUCUCUCCGACGCUGAAUGAUUC---AUUCAUCAUUU---------GCU
...(((((....-.))).))((((.....(((((((...))))))))))).(((---------------(........))))((.(((((((..---....)))))))---------)). ( -27.00)
>DroSim_CAF1 100892 92 - 1
ACUUGGCCAACU-UGGCACAGUGUCAACUUGUCUGGACUCCAGACAACACAGUC---------------GCAUCUCUCCGACGCUGAAUGAUUC---AUUCAUCAUUU---------GCU
...(((((....-.))).))((((.....(((((((...))))))))))).(((---------------(........))))((.(((((((..---....)))))))---------)). ( -27.00)
>DroEre_CAF1 79783 95 - 1
ACUUGGCCAACU-GGGCACAGUGUCAACUUGUCUGGACUCCAGACAACACAGUC---------------GCAUCUCUCCGGCGCUGAAUGAUUCAUCAUUCAUCAUUU---------GCU
..(((((..(((-(....))))))))).((((((((...))))))))....(((---------------(........))))(.(((((((....))))))).)....---------... ( -26.50)
>DroYak_CAF1 93336 101 - 1
ACUUGGCCAACU-UGGCACAGUGUCAAGUUGUCUGGACUCCAGACAACACAGUC---------------GCAUCUCUUCGACGCUGAAUGAUUC---AUUCAUCAUUUGGCUAUUCGGCU
....((((...(-((((.....)))))(((((((((...)))))))))...(((---------------(........))))((..((((((..---....))))))..)).....)))) ( -36.70)
>DroAna_CAF1 50630 104 - 1
GCUUGCCCAA----GGCACAGUGACAAGUGGCUGAGUCUCCAGACAGAAUGGUUGUGGCCAGGACAUCGGGAUCUUUCCGACGCUGAAUGAUUC---AUUCAUCAUUU---------GCU
.((((.(((.----.((.((((.(....).)))).(((....)))......))..))).))))...((((((...)))))).((.(((((((..---....)))))))---------)). ( -28.50)
>consensus
ACUUGGCCAACU_UGGCACAGUGUCAACUUGUCUGGACUCCAGACAACACAGUC_______________GCAUCUCUCCGACGCUGAAUGAUUC___AUUCAUCAUUU_________GCU
.....(((......))).(((((((...((((((((...))))))))......................(........))))))))((((((.........))))))............. (-19.65 = -20.27 +   0.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:06 2006