Locus 2502

Sequence ID 3R_DroMel_CAF1
Location 6,834,900 – 6,835,001
Length 101
Max. P 0.939611
window4102

overview

Window 2

Location 6,834,900 – 6,835,001
Length 101
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 75.87
Mean single sequence MFE -27.74
Consensus MFE -5.88
Energy contribution -6.68
Covariance contribution 0.80
Combinations/Pair 1.21
Mean z-score -2.08
Structure conservation index 0.21
SVM decision value 1.28
SVM RNA-class probability 0.939611
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6834900 101 - 27905053
ACGUAGGGAAAACUACGACCGAGUUGUCCUAAUUCCAUUCG--------CAUAGGCGAACAUCUGGGC-G--ACGUUGCUUUGUCACCGACACAAAGG--------CACAAACAACGACA
.(((((......))))).....(((((((........((((--------(....))))).....))))-)--))((((.(((((..((........))--------.))))))))).... ( -29.92)
>DroSim_CAF1 100232 101 - 1
ACGUAGGGAAAACUACGACCGAGUUGUCCUAAUUCCAUUCG--------CAUAGGCGAACAUCUGGGC-G--ACGUUGCUUUGUCACCGACACAAAAG--------CACAAACAACGACA
.(((((......)))))..((.(((((((........((((--------(....))))).....))))-)--))((.((((((((...))))...)))--------)))......))... ( -27.82)
>DroEre_CAF1 79027 101 - 1
ACGUAGUGGAAACUACGACCGAGUUGUCCUAAUUUCAUUCG--------CAUAGGCGAACAUCUGGGC-G--ACGUUGCUUUGUCACCAACACAAAAG--------CACAAACAACGACA
.((((((....))))))..((.(((((((........((((--------(....))))).....))))-)--))((.(((((............))))--------)))......))... ( -29.12)
>DroYak_CAF1 92565 101 - 1
ACGUCGCAGAAACUACGACCGAGUUGUGCUAAUUCCAUUCG--------CAUAGGCGAACAUCUGGGC-G--ACAUGGCUUUGUCACCGACACAAAAG--------CACCAACAACGACA
..((((....((((.(....)))))(((((.......((((--------(....)))))......((.-(--(((......)))).))........))--------)))......)))). ( -25.50)
>DroAna_CAF1 49971 120 - 1
AUGGUCUCCAAACUAUGCCAAAGUUACCCCAAUCCCAAUUACUCCCGGGCAUGGCUCCUCAUUCCGUCUGUAGUUUGUCUUUGUCUUCCUCACAAAAGGAUGAAAACACAAACAACGACA
..((........(((((((..(((................)))....))))))).........))(((.((.((((((.(((.((.((((......)))).))))).)))))).))))). ( -26.32)
>consensus
ACGUAGGGAAAACUACGACCGAGUUGUCCUAAUUCCAUUCG________CAUAGGCGAACAUCUGGGC_G__ACGUUGCUUUGUCACCGACACAAAAG________CACAAACAACGACA
.(((((......))))).....(((((........................((((......))))..............(((((.......)))))...............))))).... ( -5.88 =  -6.68 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:05 2006