Locus 250

Sequence ID 3R_DroMel_CAF1
Location 973,757 – 973,848
Length 91
Max. P 0.894859
window439

overview

Window 9

Location 973,757 – 973,848
Length 91
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 71.12
Mean single sequence MFE -24.91
Consensus MFE -6.99
Energy contribution -9.12
Covariance contribution 2.13
Combinations/Pair 1.44
Mean z-score -2.41
Structure conservation index 0.28
SVM decision value 0.98
SVM RNA-class probability 0.894859
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 973757 91 + 27905053
GCUGAGCUGCAGCUUCAGCACAACAGUUGCUCCUUUCAAUUUCCCCC---CUC---UU--GGGGCUUUAUUUUUUAAUGGCUCCUGCUGCCGCCUCGGU
(((((((.(((((...(((.((..(((((.......)))))...(((---(..---..--)))).............)))))...))))).).)))))) ( -27.80)
>DroVir_CAF1 30170 84 + 1
GUUGA---GUAGCA----UCUUGCAGUUGCUCUUUUCAAUUUGCAGCUACCUCU--UUUGAGGGCUUUAUUUUUUAACGACUUGUACU------UGAGU
.(..(---(((.((----..(((.((((((............)))))).((((.--...))))..............)))..))))))------..).. ( -19.60)
>DroSec_CAF1 20141 91 + 1
GCCGAGCUGCAGCUUCAGCACAGCAGUUGCUCCUUUCAAUUUCCCCC---CUC---UU--GGGGCUUUAUUUUUUAAUGGCUCCUGCUGCCGACUCGGU
(((((((.(((((...(((..(((....))).............(((---(..---..--))))...............)))...))))).).)))))) ( -31.60)
>DroSim_CAF1 21257 91 + 1
GCCGAGCUGCAGCUUCAGCACAGCAGUUGCUCCUUUCAAUUUCCCCC---CUC---UU--GGGGCUUUAUUUUUUAAUGGCUCCUGCUGCCGACUCGGU
(((((((.(((((...(((..(((....))).............(((---(..---..--))))...............)))...))))).).)))))) ( -31.60)
>DroEre_CAF1 20956 89 + 1
GCCGAGCUGCAGCUUCAGCAGAACAGUUGCUACCUUCAAUUUCCCCC---CAC---UU--GGUGCAUU--UUUUUAAUGGCUCCUGCUCCUUCCUCUGC
((.(((((((((((((....))..))))))((((.............---...---..--))))....--........)))))..))............ ( -16.07)
>DroAna_CAF1 18146 86 + 1
--------GCAAUUGGAGCCGAGCACUUGCUCUUUUCAAUUUGCUGC---CUCCUUUG--AGGAUUUUAUUUUUUAAUGGCGAGCGCUAGUGCCUUGGU
--------.........((((((((((.((............(((((---(....(((--((((......))))))).))).))))).)))).)))))) ( -22.80)
>consensus
GCCGAGCUGCAGCUUCAGCACAGCAGUUGCUCCUUUCAAUUUCCCCC___CUC___UU__GGGGCUUUAUUUUUUAAUGGCUCCUGCUGCCGCCUCGGU
((((((..((((((..........))))))..............................((((((............)))))).........)))))) ( -6.99 =  -9.12 +   2.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:40 2006