Locus 25

Sequence ID 3R_DroMel_CAF1
Location 225,046 – 225,149
Length 103
Max. P 0.500000
window42

overview

Window 2

Location 225,046 – 225,149
Length 103
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 81.19
Mean single sequence MFE -34.10
Consensus MFE -20.30
Energy contribution -20.80
Covariance contribution 0.50
Combinations/Pair 1.11
Mean z-score -1.69
Structure conservation index 0.60
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 225046 103 + 27905053
UAUGGAGCACUGGGUGGCCAUACUGGCCAUGCAAGGCCGUGCUCCACUUAAUGGUCCGUUGCUAAAGG-AAAAAAAAUUUCAUUGCCGGUAUAAGUCGCGUUUA
...(((((((((.((((((.....)))))).)).....)))))))(((((.....(((..((.....(-(((.....))))...)))))..)))))........ ( -31.90)
>DroSec_CAF1 19301 104 + 1
UAUGCAGCACUGGGUGGCCAUACUGGCCAUGCAGGGCCGUGCUCCACUUAAUGGUCCGUUGCUAAAGGGGAAAAAUAUCUCAUUACCGGGAUAAGUCGCGUUUA
...(((((..((.((((((.....)))))).))(((((((..........))))))))))))((((.(.((....((((((......))))))..)).).)))) ( -39.60)
>DroSim_CAF1 18959 103 + 1
UAUGCAGCACUGGGUGGCCAUACUGGCCAUGCAGGGCCGUGCUCCACUUAAUGGUCCGUUGCUAAAGG-GAAAAAUAUCUCAUUACCGGGAUAAGUCGCGUUUA
...(((((..((.((((((.....)))))).))(((((((..........))))))))))))....(.-((....((((((......))))))..)).)..... ( -37.80)
>DroEre_CAF1 22457 102 + 1
UAUGGAGCACUGGGUGGCCAUACUGGCCAUGUAGGGCCGUGCUCCACUUAAUGGUCCGUUGCUAAAAG-GG-ACAAAUCUCAUUAUCGCGGCACGUCACGAUUA
..((((((((.((((((((.....))))))......)))))))))).......((((.((.....)).-))-))..........((((.((....)).)))).. ( -35.40)
>DroYak_CAF1 39406 101 + 1
UAUGGAGCACCGGGUGGCCAUACUGGCCAUGCAGUGCCGUGCUCCACUUAAUGGUCCGUUGCUAAAAA-G--AAAUACCUCAUUAUCGCCACACGUCGCGAGUA
..((((((((.((((((((.....))))))......))))))))))..((((((...(((.((....)-)--.)))...))))))((((........))))... ( -30.70)
>DroAna_CAF1 17810 101 + 1
UGUGCAGCACCGGGUGUCCGUACUGACCAUGUAGGGCGGUGCUCCACUUGAUGGUUCUUUGCUGGAAU-AA-GAACACCUUGUUUUGAUUACUAUUCG-GUGUG
......((((((((((((((((..((((((.((((..((....)).)))))))).))..))).)))..-.(-((((.....)))))......))))))-)))). ( -29.20)
>consensus
UAUGCAGCACUGGGUGGCCAUACUGGCCAUGCAGGGCCGUGCUCCACUUAAUGGUCCGUUGCUAAAAG_GA_AAAUAUCUCAUUACCGGGACAAGUCGCGUUUA
.....((((..(.((((((.....)))))).).(((((((..........)))))))..))))......................................... (-20.30 = -20.80 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:33 2006