Locus 2499

Sequence ID 3R_DroMel_CAF1
Location 6,830,173 – 6,830,265
Length 92
Max. P 0.595735
window4098

overview

Window 8

Location 6,830,173 – 6,830,265
Length 92
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 84.12
Mean single sequence MFE -31.82
Consensus MFE -22.95
Energy contribution -23.32
Covariance contribution 0.36
Combinations/Pair 1.05
Mean z-score -2.05
Structure conservation index 0.72
SVM decision value 0.13
SVM RNA-class probability 0.595735
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6830173 92 - 27905053
---UUGGCCAGGCAUAGAAAAGG---------------------GCGCACA----CACGAGUUAUGCAGCUGCUCUCGGUGCGGCUUUUAAUUUGCUUAAUUUUGCGCUUAGCCACAGCA
---.((((.((((.....(((((---------------------.(((((.----..((((....((....)).))))))))).))))).....((........)))))).))))..... ( -31.50)
>DroSec_CAF1 89302 92 - 1
---UUGGCCGGGCAUAGAAAAGG---------------------GCUCACA----UACGAGUUAUGCAGCUGCUCUCGGUGCGGCUUUUAAUUUGCUUAAUUUUGCGCUUAGCCACAGCA
---.((((..(((......((((---------------------((.(.((----(.((((....((....)).))))))).))))))).....((........)))))..))))..... ( -28.00)
>DroSim_CAF1 95628 92 - 1
---UUGGCCGGGCAUAGAAAAGG---------------------GCUCACA----UACGAGUUAUGCAGCUGCUCUCGGUGCGGCUUUUAAUUUGCUUAAUUUUGCGCUUAGCCACAGCA
---.((((..(((......((((---------------------((.(.((----(.((((....((....)).))))))).))))))).....((........)))))..))))..... ( -28.00)
>DroEre_CAF1 74300 95 - 1
CUGUUGGCCGGGCAUAGAAAAAG---------------------GCUCACA----CACGAGUUAUGCAGCUGCUCUCGGUGCGGCUUUUAAUUUGCUUAAUUUUGCGCUUAGCCACAGCA
((((.(((..(((......((((---------------------((.(.((----(.((((....((....)).))))))).))))))).....((........)))))..))))))).. ( -33.80)
>DroYak_CAF1 87661 97 - 1
CUGUUGGCCGGGCAUAGAAAAAG---------------------GCUCACACA--CACGAGUUAUGCAGCUGCUCUCGGUGCGGCUUUUAAUUUGCUUAAUUUUGCGCUUAGCCACAGCA
((((.(((..(((......((((---------------------(((....((--(.((((....((....)).))))))).))))))).....((........)))))..))))))).. ( -32.00)
>DroAna_CAF1 45473 120 - 1
ACUUUAUCCGGGCAUAGAAAAUCCCUAUAUGUAUGCAUAUGUAUGCUUAUAUGUAUUAGAGGUAUGCAGCUGCGCUCGGUGCGGCUUUUAAUUUGCUUAAUUUUGCGCUUAGCCGCAGCA
.......((((((((((.......))))......(((..(((((((((.((.....)).)))))))))..)))))))))(((((((.......(((........)))...)))))))... ( -37.60)
>consensus
___UUGGCCGGGCAUAGAAAAGG_____________________GCUCACA____CACGAGUUAUGCAGCUGCUCUCGGUGCGGCUUUUAAUUUGCUUAAUUUUGCGCUUAGCCACAGCA
....((((..(((.............................................((((((...((((((.......))))))..))))))((........)))))..))))..... (-22.95 = -23.32 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:00 2006