| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,827,563 – 6,827,682 |
| Length | 119 |
| Max. P | 0.793768 |
| Location | 6,827,563 – 6,827,682 |
|---|---|
| Length | 119 |
| Sequences | 3 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 98.32 |
| Mean single sequence MFE | -37.30 |
| Consensus MFE | -33.23 |
| Energy contribution | -33.57 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.30 |
| Structure conservation index | 0.89 |
| SVM decision value | 0.59 |
| SVM RNA-class probability | 0.793768 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6827563 119 - 27905053 AACCGAGCGAAAGUAAACACAACAGGCGCUCAGCCAAAGGGCUUUAAAGCAUCAAAUAUUACGCAUACGCAGCGUGUGCGGCGGCCAGAGCAAGAGCGAGACAGCAGGCUAGUGUGGAA ......((....))...((((..((.(((((.(((.....(((....)))...........((((((((...))))))))..)))..))))....((......)).).))..))))... ( -37.70) >DroSec_CAF1 86640 119 - 1 AACCGAGAGAAAGUAAACACAACAGGCGCUCAGCCAAAGGGCUUUAAAGCAUCAAAUAUUACGCAUACGCAACGUGUGCGGCGGGCAGAGCAAGAGCGAGACAGCAGGCUAGUGUGGAA .................((((..((.(((((.(((.....(((....)))...........((((((((...))))))))...))).))))....((......)).).))..))))... ( -35.80) >DroSim_CAF1 92513 119 - 1 AACCGAGCGAAAGUAAACACAACAGGCGCUCAGCCAAAGGGCUUUAAAGCAUCAAAUAUUACGCAUACGCAGCGUGUGCGGCGGGCAGAGCAAGAGCGAGACAGCAGGCUAGUGUGGAA ......((....))...((((..((.(((((.(((.....(((....)))...........((((((((...))))))))...))).))))....((......)).).))..))))... ( -38.40) >consensus AACCGAGCGAAAGUAAACACAACAGGCGCUCAGCCAAAGGGCUUUAAAGCAUCAAAUAUUACGCAUACGCAGCGUGUGCGGCGGGCAGAGCAAGAGCGAGACAGCAGGCUAGUGUGGAA .................((((..((.(((((.(((.....(((....)))...........((((((((...))))))))...))).))))....((......)).).))..))))... (-33.23 = -33.57 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:55 2006