| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,824,876 – 6,824,994 |
| Length | 118 |
| Max. P | 0.591581 |
| Location | 6,824,876 – 6,824,994 |
|---|---|
| Length | 118 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 81.80 |
| Mean single sequence MFE | -36.78 |
| Consensus MFE | -19.52 |
| Energy contribution | -22.67 |
| Covariance contribution | 3.14 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.41 |
| Structure conservation index | 0.53 |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.591581 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6824876 118 + 27905053 AUUUCAGAGUUUUCCAGUGGGCGUAUGGGGGUGUAUGUGUGUGCUCAUGUAAGGGGGGGAUC-A-GCUCGUUUUUUAUGGCGCACACACACAUAAAUAACCAAAGGAUCUCGAGUGCUAA ......(((...(((..(((...(((....((((.(((((((((.((((.((((.(((....-.-.))).)))).))))))))))))).))))..))).)))..))).)))......... ( -40.30) >DroSec_CAF1 83948 117 + 1 AUUUCAGAGUUUUUCAGCGGUCGUAUGUGUAUGUGUGUGUGUGCUCAUGUAAGGGG--GAUCUA-GCUCGUUUUUUAUGGCGCACACACACAUAAAUAACCAAAGGAUCUCGAGUGCUAA ...............((((.(((..(((.(((((((((((((((.((((.(((.((--(.....-.))).)))..))))))))))))))))))).))).((...))....))).)))).. ( -41.20) >DroSim_CAF1 89867 111 + 1 AUUUCAGAGUUUUCCAGCGGUCGUAUG------UGUGUGUGUGCUCAUGUAAGGGG--GAUCUA-GCUCGUUUUUUAUGGCGCACACACACAUAAAUAACCAAAGGAUCUCGAGUGCUAA ......(((...(((...(((..((((------(((((((((((.((((.(((.((--(.....-.))).)))..)))))))))))))))))))....)))...))).)))......... ( -42.30) >DroEre_CAF1 68903 115 + 1 AUUUCAGAGUUUUCCACCGGGCGUGUGUG--UUUGUGUGAGUGCUCAUGUAGGGGG--GAUCUA-GCCCGCUUUUUAUGGGGCACACACACAUAAAUAACCAAAGGAUCUCGAGUGCUAA ......(((...(((...((..((.((((--(.((((((....((((((.(((.((--(.....-.))).)))..)))))).)))))).))))).))..))...))).)))......... ( -36.50) >DroYak_CAF1 82178 105 + 1 AUUUCAGAGUUUUUC----------UCUG--UAUGUGUGAGUGCUCAUGUUGGGGG--GAUCUA-GCUCGCUUUUUAUGGUGCACACACACAUAAAUAAGCAAAGGAUCUCGAGUGCUAA ....(((((.....)----------))))--((((((((.(((((((((..((.((--(.....-.))).))...))))).)))).))))))))....((((...(....)...)))).. ( -34.20) >DroAna_CAF1 40512 108 + 1 AAUU-----UUCCCGAGUGGCUGUAGGUGUAUGAGUGUGUGUG-----GUUGAAGG--GAUCUAUGCUCGUUUUUUAUGGGGCACACACACAUAAAUAACCAAAGGAUCUGGCGUGCUAA ....-----..((.((....((...(((.((((.(((((((((-----(((.....--))))....(((((.....))))))))))))).))))....)))...)).)).))........ ( -26.20) >consensus AUUUCAGAGUUUUCCAGCGGGCGUAUGUG__UGUGUGUGUGUGCUCAUGUAAGGGG__GAUCUA_GCUCGUUUUUUAUGGCGCACACACACAUAAAUAACCAAAGGAUCUCGAGUGCUAA ......(((...(((...((...(((.....((((((((((((((((((.((.(((..........))).))...))))).))))))))))))).))).))...))).)))......... (-19.52 = -22.67 + 3.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:45 2006