Locus 2491

Sequence ID 3R_DroMel_CAF1
Location 6,823,926 – 6,824,044
Length 118
Max. P 0.500000
window4081

overview

Window 1

Location 6,823,926 – 6,824,044
Length 118
Sequences 5
Columns 118
Reading direction forward
Mean pairwise identity 93.05
Mean single sequence MFE -32.68
Consensus MFE -30.70
Energy contribution -31.06
Covariance contribution 0.36
Combinations/Pair 1.15
Mean z-score -1.05
Structure conservation index 0.94
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6823926 118 + 27905053
CAAACACAUUAUUGGCUACAAGUGUUUUAUUCGGAACUAAUUGUGGCUGAGAGUCCUCGAUUUUAUCUCAGAGUGUGCAGAUAGACAAACGGCAUGCCAGCCCAGCCUGUCUGCCUCC
...((((......((((((((..((((......))))...))))))))((((.............))))...))))((((((((.(....(((......)))..).)))))))).... ( -34.52)
>DroSec_CAF1 82990 118 + 1
CAAACACAUUAUUGGCUUCAAGUGUUUUAUUCGGAACUAAUUGUGGCUGAGAGUCCUCGAUUUUAUCUCAAAGUGUGCAGAUAGACAAACGGCAUGCCAGCCCGGCCUGUCUGCCUCC
...((((......((((.(((..((((......))))...))).))))((((.............))))...))))((((((((.(....(((......)))..).)))))))).... ( -31.32)
>DroSim_CAF1 88918 118 + 1
CAAACACAUUAUUGACUGCAAGUGUUUUAUUCGGAACUAAUUGUGGCUGAGAGUCCUCGAUUUUAUCUCAAAGUGUGCAGAUAGACAAACGGCAUGCCAGCCCGGCCUGUCUGCCUCC
...((((........(..(((..((((......))))...)))..).(((((.............)))))..))))((((((((.(....(((......)))..).)))))))).... ( -30.52)
>DroEre_CAF1 67938 118 + 1
CAAAAACAUUAUUGGCUACAGGGGUUUUAUUUGGAACAAAUUGUCGCUGAGGGUCCUCGAUUUUAUCUCAAAGUGUGCAGACAGACAAACGGCAUGGCAGCCCUGCCUGUCUGCCUCC
.....(((((...(((.((((..(((((....)))))...)))).)))(((....))).............)))))((((((((.((...(((......))).)).)))))))).... ( -33.20)
>DroYak_CAF1 81221 118 + 1
CUAACACAUUAUUGGGUACAAGCGUUUUAUUUGGCACUAAUUGUGGCCGAGAGUCCUCGAUUUUAUCUCAAAGUGUGCAGACAGACAAACGGCAUGCCAGCCCUGCCUGUCUGCCUCC
...((((......((.((((((.(((......))).))...)))).))((((.............))))...))))((((((((.((...(((......))).)).)))))))).... ( -33.82)
>consensus
CAAACACAUUAUUGGCUACAAGUGUUUUAUUCGGAACUAAUUGUGGCUGAGAGUCCUCGAUUUUAUCUCAAAGUGUGCAGAUAGACAAACGGCAUGCCAGCCCGGCCUGUCUGCCUCC
...((((......((((((((..(((((....)))))...))))))))((((.............))))...))))((((((((.(....(((......)))..).)))))))).... (-30.70 = -31.06 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:44 2006