| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 971,265 – 971,370 |
| Length | 105 |
| Max. P | 0.954313 |
| Location | 971,265 – 971,370 |
|---|---|
| Length | 105 |
| Sequences | 3 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 87.86 |
| Mean single sequence MFE | -23.53 |
| Consensus MFE | -19.60 |
| Energy contribution | -20.60 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -3.07 |
| Structure conservation index | 0.83 |
| SVM decision value | 1.44 |
| SVM RNA-class probability | 0.954313 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 971265 105 + 27905053 CACAUUGUACUAUAUGUUUUAUAUAUGUUUUAUAUGUUUCAUAUAUUUCAUGUGUGUUAUGGUUUCACCUUUAUGGCUACACAUGUUGCAUGUAACUGACUGUUC .((((.(((.((((((...((((((.....))))))...))))))...((((((((((((((........))))))).))))))).)))))))............ ( -23.30) >DroSec_CAF1 17656 94 + 1 ---------CUAUAUGUACU--AUAUGUUUAAUAUGUUUUAUAUGUUUCAUGUGUGUUAUGGUUUCACCUUUAGGGCUACACAUGUUGCAUGUAACUGACUGUUC ---------.(((((..((.--....))...)))))..((((((((..((((((((((..((.....)).....))).)))))))..)))))))).......... ( -21.70) >DroSim_CAF1 18704 103 + 1 UACAUUGUACUAUAUGUUGA--AUAUGUUUUAUAUGUUUUAUAUGUUUCAUGUGUGUUAUGGUUUCACCUUUAUGGCUACACAUGUUGCAUGUAACUGACUGUUC .((((.(((..((((((...--))))))..))))))).((((((((..((((((((((((((........))))))).)))))))..)))))))).......... ( -25.60) >consensus _ACAUUGUACUAUAUGUUCU__AUAUGUUUUAUAUGUUUUAUAUGUUUCAUGUGUGUUAUGGUUUCACCUUUAUGGCUACACAUGUUGCAUGUAACUGACUGUUC ...........((((((.....)))))).......(((.(((((((..((((((((((((((........))))))).)))))))..)))))))...)))..... (-19.60 = -20.60 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:39 2006