| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,815,514 – 6,815,622 |
| Length | 108 |
| Max. P | 0.887125 |
| Location | 6,815,514 – 6,815,622 |
|---|---|
| Length | 108 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 76.11 |
| Mean single sequence MFE | -31.90 |
| Consensus MFE | -13.55 |
| Energy contribution | -14.63 |
| Covariance contribution | 1.08 |
| Combinations/Pair | 1.22 |
| Mean z-score | -2.09 |
| Structure conservation index | 0.42 |
| SVM decision value | 0.94 |
| SVM RNA-class probability | 0.887125 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6815514 108 - 27905053 ----CAUUUCCUGCAAUUGUUAGAUUGUUAGAUAG--------GUAGAUAGUUUUGGGUGUGUGGCCAUCUAUAUCCAUCUGCGUUUGUCGGGAGAUUUGGAGCUAUUUGACAGCGGGAU ----....((((((((((....))))(((((((((--------((((((.(...((((((......))))))...).))))))....(((....)))......))))))))).)))))). ( -32.50) >DroSec_CAF1 74657 116 - 1 ----CAUUUCCUGCGAUUGUUAGAUUGUUAGAUAGUUGGAUAGGUAGAUAGUUUUGGGUGUGUGGCCAUCCAUAUCCAUCUGCGUUUGUCAGGAGAUUUUGAGCUAUUUGACAGCGGGAU ----....((((((((((....))))(((((((((((.((...((((((.(...((((((......))))))...).))))))....(((....))).)).))))))))))).)))))). ( -36.60) >DroEre_CAF1 59572 106 - 1 ----CAUUUCCUGCGAUUGUUAGAUAUUUAGAUAG--------GUAGAUCGUUAUG--UGUCUGCCCAUCUAUAUCCAUCUGCGUUUGUCAGGAGAUUUGGAGCUGUUCGACAGCGGGAU ----.(((((((((((.(((.((((...(((((.(--------((((((.......--.))))))).))))).....))))))).))).)))))))).....((((.....))))..... ( -34.80) >DroYak_CAF1 72697 110 - 1 UUUGCAUUUCCUGCGAUUGUUAGAUAGUUAGACAG--------GUAGAUAGUUUUG--UGUGGGGCCAUCUAUAUCCAUCUGCGUUUGUCAGGAGAUUUGGAGCUAUUCGACAGCGGGAU ........((((((...(((..((((((.......--------((((((.(((((.--...))))).)))))).(((((((.(........).)))..))))))))))..))))))))). ( -31.20) >DroAna_CAF1 31607 97 - 1 ----CAUUUCCUUCGCUUGAUCUACACCCACCU----------CCACAUAG-------UGGGUGCUCGUCUAAAUACGUCUGCAUUUGUCAGGCUAUUUGGUAUUAUAUGACAGCAGG-- ----.....(((..(((.(.((..(((((((..----------.......)-------)))))).....(((((((.((((((....).))))))))))))........)))))))))-- ( -24.40) >consensus ____CAUUUCCUGCGAUUGUUAGAUAGUUAGAUAG________GUAGAUAGUUUUG__UGUGUGGCCAUCUAUAUCCAUCUGCGUUUGUCAGGAGAUUUGGAGCUAUUUGACAGCGGGAU ........((((((.............................((((((.........((......)).........))))))...(((((((((........)).))))))))))))). (-13.55 = -14.63 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:29 2006