| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,815,007 – 6,815,127 |
| Length | 120 |
| Max. P | 0.561569 |
| Location | 6,815,007 – 6,815,127 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 92.00 |
| Mean single sequence MFE | -40.22 |
| Consensus MFE | -34.10 |
| Energy contribution | -33.84 |
| Covariance contribution | -0.26 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.26 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.561569 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6815007 120 + 27905053 UGGGCCCCGCUGCACAAUUUGUUGUAUUAUUUAGCAAAGUUCACUUGAGCGUGUAGUUGAAAUGAAAGUGGGCAUGGUCCAGGCACCUGGGGGCGCGAGAAGCGGGGGCUAGCGAUUCGG (((.(((((((((((..(((((((.......)))))))((((....))))))))..............((.((....(((((....))))).)).))...))))))).)))......... ( -41.60) >DroSec_CAF1 74155 120 + 1 UGGGCCCCACUGCACAAUUUGUUGUAUUAUUUAGCAAAGUUCACUUGAGCGUGUAGUUGAAAUGAAAGUGGGCAUGGUACAGGCGCCUGGGGGCGCGAGAAGCGGGGGCGAGCGAUUCGG ...(((((.(((.((..(((((((.......)))))))((((((((...(((.........))).))))))))...)).)))(((((....)))))........)))))........... ( -40.80) >DroEre_CAF1 59062 120 + 1 UGGGCCCCACUGCACAAUUUGUUGUAUUAUUUAGCAAAGUUCACUUGAGCGUGUAGUUGAAAUGAAAGUGGGCAUGGUCCAGGCGCCUGGGGGCGAAAGAAGCGGGGGCUAGCCAUUCGG ...((((.(((((((..(((((((.......)))))))((((....)))))))))))....((....))))))(((((...(((.((((....(....)...)))).))).))))).... ( -40.60) >DroYak_CAF1 72187 120 + 1 UGGGCCCCACUGCACAAUUUGUUGUAUUAUUUAGCAAAGUUCACUUGAGCGUGUAGUUGAAAUGAAAGUGGGCAUGGUCCAGGUGCCUGGGGGCGAAAGAAGCGGGGGCCAGCGAUUCGG ..(((((((((((((..(((((((.......)))))))((((....)))))))))))..............((....(((((....)))))..(....)..)).)))))).......... ( -42.30) >DroAna_CAF1 31110 113 + 1 UGGGCCCCACUGCACAAUUUGUUGUAUUAUUUAGCAAAGUUCACUUGAGCGUGUAGUCGAAAUGAAAGUGGGCAUGGUCCAGGC---CGGAGGCAACAGAAGUG--GGCUGGGGAU--GG ...((((.(((((((..(((((((.......)))))))((((....)))))))))))....((....))))))...((((.(((---(.(.(....).....).--))))..))))--.. ( -35.80) >consensus UGGGCCCCACUGCACAAUUUGUUGUAUUAUUUAGCAAAGUUCACUUGAGCGUGUAGUUGAAAUGAAAGUGGGCAUGGUCCAGGCGCCUGGGGGCGAAAGAAGCGGGGGCUAGCGAUUCGG (((((((.(((((((..(((((((.......)))))))((((....))))))))))).)..(((........)))))))))(((.((((....(....)...)))).))).......... (-34.10 = -33.84 + -0.26)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:28 2006