| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,814,239 – 6,814,347 |
| Length | 108 |
| Max. P | 0.618013 |
| Location | 6,814,239 – 6,814,347 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 89.13 |
| Mean single sequence MFE | -36.18 |
| Consensus MFE | -29.12 |
| Energy contribution | -29.76 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.15 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.618013 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6814239 108 + 27905053 -UAACCAUAUUUUGUCUGGGGUGAAUGGAGCCCCAAAAGGGGACAUAAAUAGCUUCCCAGUGGGGCAUAGAUAAACCCUCAGACGGAGUU-C---CACACA-------GCUCCCCCUUCC -............(((((((((.......((((((...((((((.......).)))))..))))))........)))).)))))((((((-.---.....)-------)))))....... ( -39.36) >DroSec_CAF1 73411 108 + 1 -UAACCGAAUUUUGUCUGGGGUGAAUGGAGCCCCAAAAGAGGACAUAAAUAGCUUCCCGGUGGGGCAUAGAUAAACCCUCAGACGGAGUU-C---CACACA-------GCUCCCCCUUCC -.....((((((((((((((((.......((((((...(.(((...........))))..))))))........)))).)))))))))))-)---......-------............ ( -37.06) >DroSim_CAF1 78066 108 + 1 -UAACCGAAUUUUGUCUGGGGUGAAUGGAGCCCCAAAAGAGGACAUAAAUAGCUUCCCGGUGGGGCAUAGAUAAACCCUCAGACGGAGUU-C---CACACA-------GCUCCCCCUUCC -.....((((((((((((((((.......((((((...(.(((...........))))..))))))........)))).)))))))))))-)---......-------............ ( -37.06) >DroEre_CAF1 58297 112 + 1 GUAACCGAAUUUCGUCUGGGGUGAAUGGAGCCCCAAAAGAGGACAUAAAUAGCUUCCCGGUGGGGCAUAGAUAAACCCUCAGACGGAGUU-CCUCCACACG-------ACUCCCCCCUCC ......((((((((((((((((.......((((((...(.(((...........))))..))))))........)))).)))))))))))-).........-------............ ( -39.06) >DroYak_CAF1 71390 109 + 1 GUAACCGAAUUUCGUCUGGGGUGAAUGGAGACCCCAAAGAGGACAUAAAUAGCUUCCCGGUGGGGCAUAGAUAAACCCUCAGACGGAGUU-C---CACACA-------GCUCCCCCUUCC ......((((((((((((((((..((..(..(((((..(.(((...........))))..)))))..)..))..)))).)))))))))))-)---......-------............ ( -37.40) >DroAna_CAF1 30332 115 + 1 -UGGCUGAAUUUUCUGUGGGGUGAAAGGAGCCCCA-AAGAGGACAUAAAUAGCUUCCCAGUAGGGCAUAGAUAAACCCUCAGACGGAGUUUC---CACCCCUCUAUUUGCUCCCUUUCCC -.(((.((((.....(.((((((...(((((((..-..((((.......((....(((....)))..)).......))))....)).)))))---)))))).).)))))))......... ( -27.14) >consensus _UAACCGAAUUUUGUCUGGGGUGAAUGGAGCCCCAAAAGAGGACAUAAAUAGCUUCCCGGUGGGGCAUAGAUAAACCCUCAGACGGAGUU_C___CACACA_______GCUCCCCCUUCC .......(((((((((((((((.......((((((...((((.(.......)))))....))))))........)))).))))))))))).............................. (-29.12 = -29.76 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:27 2006