Locus 2481

Sequence ID 3R_DroMel_CAF1
Location 6,813,868 – 6,813,985
Length 117
Max. P 0.998502
window4063

overview

Window 3

Location 6,813,868 – 6,813,985
Length 117
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 93.16
Mean single sequence MFE -26.88
Consensus MFE -24.05
Energy contribution -24.72
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -2.81
Structure conservation index 0.89
SVM decision value 3.12
SVM RNA-class probability 0.998502
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6813868 117 - 27905053
UACUUAGCCACCUCUUUCCC---CUAUUAAGCCGAAGCUAACCAUUAAUCUAAACCACUUUGGACACGGCACAAACAAUUGCCGUGUUGGCCCCGGUGUUAACAACUUUUUCACGGCUCU
.....((((...........---.......((((..((((((......((((((....)))))).((((((........))))))))))))..))))((.....))........)))).. ( -28.30)
>DroSec_CAF1 73064 117 - 1
UACUUAGCCACCUCUUUCCC---CUUUUAAGCCGAAGCUAACCAUUAAUCUAAACCACUUUGGACACGGCACAAACAUUUGCCGUGUUGGCCCCGGUGUUAACAACUUUUUCACGGCUCU
.....((((...........---.......((((..((((((......((((((....)))))).((((((........))))))))))))..))))((.....))........)))).. ( -28.30)
>DroSim_CAF1 77719 117 - 1
UACUUAGCCACCUCUUUCCC---CUUUUAAGCCGAAGCUAACCAUUAAUCUAAACCACUUUGGACACGGCACAAACAAUUGCCGUGUUGGCCCCGGUGUUAACAACUUUUUCACGGCUCU
.....((((...........---.......((((..((((((......((((((....)))))).((((((........))))))))))))..))))((.....))........)))).. ( -28.30)
>DroEre_CAF1 57925 117 - 1
UACUUAACCACCAAUUCCCC---CUUUUAAGCCGAAGCUAACCAUUAAUCUAAACCACUUUGGACACGGCACAAACAAUUGCCGUGUUGGCCCCGGUGUUAACAACUUUUUCACGGCUCA
....................---......(((((..((((((......((((((....)))))).((((((........))))))))))))....((....))..........))))).. ( -25.30)
>DroYak_CAF1 71025 117 - 1
UACUUAACCACCAAUUCCCC---CUUUUAAGCCGAAGCUAACCAUUAAUCUAAACCACUUUGGACACGGCACAAACAAUUGCCGUGUUGGCCCCGGUGUUAACAACUUUUUCACGGCUCA
....................---......(((((..((((((......((((((....)))))).((((((........))))))))))))....((....))..........))))).. ( -25.30)
>DroAna_CAF1 29839 115 - 1
UACUUAGCCCC--GUUUCCCUUGCUUUUAGCCCG--CCUAACCAUUAAUCUAAACCAUUUUGGACACGGCACCAACAAUUGCCGUGUUGGCCCCGGUGUUAACAACUUUUUCA-GGCUCU
.....((((..--((.......))..((((((((--.....(((..........((.....))((((((((........)))))))))))...))).)))))...........-)))).. ( -25.80)
>consensus
UACUUAGCCACCUCUUUCCC___CUUUUAAGCCGAAGCUAACCAUUAAUCUAAACCACUUUGGACACGGCACAAACAAUUGCCGUGUUGGCCCCGGUGUUAACAACUUUUUCACGGCUCU
.....((((.....................((((..((((((......((((((....)))))).((((((........))))))))))))..))))((.....))........)))).. (-24.05 = -24.72 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:26 2006