Locus 2480

Sequence ID 3R_DroMel_CAF1
Location 6,812,655 – 6,812,750
Length 95
Max. P 0.947255
window4062

overview

Window 2

Location 6,812,655 – 6,812,750
Length 95
Sequences 4
Columns 97
Reading direction forward
Mean pairwise identity 95.83
Mean single sequence MFE -15.84
Consensus MFE -14.27
Energy contribution -14.33
Covariance contribution 0.06
Combinations/Pair 1.05
Mean z-score -2.42
Structure conservation index 0.90
SVM decision value 1.37
SVM RNA-class probability 0.947255
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6812655 95 + 27905053
ACC--ACAUAGAGCUGUGAAUUAUUUCACGCUUUGCUUUAUUAUAAAACACUUUUAUGUCUUCAUAUAACCCAAACAUUUUGAGUGCCACACACACA
...--...((((((.(((((....))))))))))).............(((((..((((...............))))...)))))........... ( -15.36)
>DroSec_CAF1 70737 95 + 1
ACC--ACAUAGAGCUGUGAAUUAUUUCACGCUUUGCUUUAUUAUAAAACACUUUUAUGUCUUCAUAUAACCCAAACAUUUUGAGUGCCACACACACA
...--...((((((.(((((....))))))))))).............(((((..((((...............))))...)))))........... ( -15.36)
>DroSim_CAF1 76467 95 + 1
ACC--ACAUAGAGCUGUGAAUUAUUUCACGCUUUGCUUUAUUAUAAAACACUUUUAUGUCUUCAUAUAACCCAAACAUUUUGAGUGCCACACACACA
...--...((((((.(((((....))))))))))).............(((((..((((...............))))...)))))........... ( -15.36)
>DroAna_CAF1 28770 97 + 1
ACCACACAUAGCGCUGUGAAUUAUUUCACGCUUUGCUUUAUUAUAAAGCACUUUUAUGUCUUCAUAUAACCCAAACGUUUUGAGUGCCGCCCACAAA
..(((.((.(((((.(((((....)))))))..(((((((...)))))))....((((....))))..........))).)).)))........... ( -17.30)
>consensus
ACC__ACAUAGAGCUGUGAAUUAUUUCACGCUUUGCUUUAUUAUAAAACACUUUUAUGUCUUCAUAUAACCCAAACAUUUUGAGUGCCACACACACA
........((((((.(((((....))))))))))).............(((((..((((...............))))...)))))........... (-14.27 = -14.33 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:25 2006