Locus 2479

Sequence ID 3R_DroMel_CAF1
Location 6,809,612 – 6,809,727
Length 115
Max. P 0.897954
window4061

overview

Window 1

Location 6,809,612 – 6,809,727
Length 115
Sequences 5
Columns 115
Reading direction forward
Mean pairwise identity 98.78
Mean single sequence MFE -26.42
Consensus MFE -24.34
Energy contribution -24.10
Covariance contribution -0.24
Combinations/Pair 1.05
Mean z-score -1.61
Structure conservation index 0.92
SVM decision value 1.00
SVM RNA-class probability 0.897954
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6809612 115 + 27905053
AGCACGAGUGCAAAAUAAAAAUCGAUUUCGCCGGCAGCUGAAAUGCUGGCAGCAAAUAAAAUAAACGACACAUGGCUGCGAAACGGAAACUGCGAUAUGCGAGCUGAGAAACAAA
.(((....)))..........(((...(((((((((.......)))))(((((.....................))))).....(....).))))....)))............. ( -25.00)
>DroSec_CAF1 67865 115 + 1
AGCACGAGUGCAAAAUAAAAAUCGAUUUCGCCGGCAGCUGAAAUGCUGGCAGCAAAUAAAAUAAACGACACAUGGCUGUGAAACGGAAACUGCGAUAUGCGAGCUGAGAAACAAA
.(((....)))..........(((...(((((((((.......))))))).(((..............((((....))))....(....))))))....)))............. ( -27.00)
>DroSim_CAF1 73439 115 + 1
AGCACGAGUGCAAAAUAAAAAUCGAUUUCGCCGGCAGCUGAAAUGCUGGCAGCAAAUAAAAUAAACGACACAUGGCUGUGAAACGGAAACUGCGAUAUGCGAGCUGAGAAACAAA
.(((....)))..........(((...(((((((((.......))))))).(((..............((((....))))....(....))))))....)))............. ( -27.00)
>DroEre_CAF1 53583 115 + 1
AGCACGAGUGCAAAAUAAAAAUCGAUUUCGCCGGCAGCUGAAAUGCUGGCAGCAAAUAAAAUAAACGACACAUGGCUGCGAAACGGAAACUGCGAUAUGCGAGCUGAGAAACAAA
.(((....)))..........(((...(((((((((.......)))))(((((.....................))))).....(....).))))....)))............. ( -25.00)
>DroYak_CAF1 66547 115 + 1
AGCACGAGUGCAAAAUAAAAAUCGAUUUCGCCGGCAGCUGAAUUGCUGGCAGCAAAUAAAAUAAACGACACAUGGCUGCGAAACGGAAACUGCGAUAUGCGAGCUGAGAAGCAAA
.(((....)))..........(((...((((...((((......))))(((((.....................))))).....(....).))))....)))(((....)))... ( -28.10)
>consensus
AGCACGAGUGCAAAAUAAAAAUCGAUUUCGCCGGCAGCUGAAAUGCUGGCAGCAAAUAAAAUAAACGACACAUGGCUGCGAAACGGAAACUGCGAUAUGCGAGCUGAGAAACAAA
.(((....)))..........(((...((((...((((......))))(((((.....................))))).....(....).))))....)))............. (-24.34 = -24.10 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:24 2006