Locus 2475

Sequence ID 3R_DroMel_CAF1
Location 6,807,437 – 6,807,549
Length 112
Max. P 0.500000
window4056

overview

Window 6

Location 6,807,437 – 6,807,549
Length 112
Sequences 4
Columns 112
Reading direction reverse
Mean pairwise identity 91.07
Mean single sequence MFE -25.38
Consensus MFE -18.52
Energy contribution -19.27
Covariance contribution 0.75
Combinations/Pair 1.00
Mean z-score -1.67
Structure conservation index 0.73
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6807437 112 - 27905053
GAAAAUGUUGAGUAAAUUUGAAGAAAGUUUGCAGUAUUGCCGCAAAGAUUAUUCAGAUAAGAUAAUAAAUAAGAAAGGCCAACAUGGCGUAUGCGUCAUACUUGUCUUGCUC
.........((((..(((((((.....(((((.(.....).))))).....)))))))(((((((............(((.....)))(((((...)))))))))))))))) ( -24.20)
>DroSec_CAF1 65705 112 - 1
GAAAAAGUUGAGUAAAUUUGGAAAAAGUUGGCAGUAUUGCCGCAAAGAUUAUUUAGAUAAGAUAAUAAAUAAGCAAGGCCAACAUGGCGUAUGCGUAAUACUUGUCUUGCUC
.........((((((.(((....)))...(((((((((((.......(((((((.....)))))))......((((.(((.....))).).)))))))))).)))))))))) ( -25.70)
>DroSim_CAF1 71266 112 - 1
GAAAAUGUUGAGUAAAUUUGGAAAAAGUUUGCAGUAUUGCCGCAAAGAUUAUUUAGAUAAGAUAAUAAAUAAGCAAGGCCAACAUGGCGGAUGCGUAAUACUUGCCUUGCUC
.........((((((.(((....)))....((((((((((.(((...(((((((.....)))))))...........(((.....)))...)))))))))).))).)))))) ( -24.50)
>DroEre_CAF1 51414 112 - 1
GAAAAUGUUGCGUAAAUUUGGAAAAAGUUUGCAGUAUUGCCGCAAAUAUUAUUCAGAUAAGAUAAUAAAUAAGCACGGCCAACAUGGCGGAUGGGUAAUACCAGCCCCCAUC
......((((.((((((((.....)))))))).((((((((((...(((((((.......))))))).....)).(.(((.....))).)...))))))))))))....... ( -27.10)
>consensus
GAAAAUGUUGAGUAAAUUUGGAAAAAGUUUGCAGUAUUGCCGCAAAGAUUAUUCAGAUAAGAUAAUAAAUAAGCAAGGCCAACAUGGCGGAUGCGUAAUACUUGCCUUGCUC
...........((((((((.....)))))))).(((((((.(((...((((((.......))))))...........(((.....)))...))))))))))........... (-18.52 = -19.27 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:19 2006