Locus 2473

Sequence ID 3R_DroMel_CAF1
Location 6,806,150 – 6,806,246
Length 96
Max. P 0.541903
window4053

overview

Window 3

Location 6,806,150 – 6,806,246
Length 96
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 72.50
Mean single sequence MFE -30.22
Consensus MFE -14.73
Energy contribution -16.80
Covariance contribution 2.07
Combinations/Pair 1.20
Mean z-score -1.61
Structure conservation index 0.49
SVM decision value 0.02
SVM RNA-class probability 0.541903
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6806150 96 + 27905053
AUGCGGUGACAUGUCCUC---UGAA------------------GAUGGGACGUGACCGGGAUGAGGAUCAAGCAGUGCUCAGUGCAGCAUUACUUUGUAU---CUCUGAUCCAGGCAAAU
.((((((..((((((((.---....------------------...))))))))))).((((.(((((((((.((((((......)))))).).))).))---).)).))))..)))... ( -33.80)
>DroSec_CAF1 64444 75 + 1
AUGCG------------------------------------------GGACGUGACCGGGAUGAGGAUCAAGCAGUGCUCAGUGCAGCAUUACUUUGUAU---CUCUGAUCCAGGCAAAU
.((((------------------------------------------(.......)).((((.(((((((((.((((((......)))))).).))).))---).)).))))..)))... ( -22.10)
>DroSim_CAF1 69982 96 + 1
AUGCGGUGACAUGUCCCC---UGAA------------------GAAGGGACGUGACCGGGAUGAGGAUCAAGCAGGGCUCAGUGCAGCAUUACUUUGUAU---CUCUGAUCCAGGCAAAU
.((((((..((((((((.---....------------------...))))))))))).((((.(((((((((....(((......))).....)))).))---).)).))))..)))... ( -32.80)
>DroEre_CAF1 50164 99 + 1
AUGCUGUGACAUGUCCUC---UGAA------------------GGAGGAACGUGACCGGGAUGAGGAUCAAGCAGUGCUCAAUGCAGCAUUACUCUAGGUCGUCUCUGAUCCAGGCAAAU
.((((....(((((((((---....------------------.)))).)))))....((((((.((((.((.((((((......))))))...)).)))).))....)))).))))... ( -30.40)
>DroYak_CAF1 63014 96 + 1
AUGCGGUGACAUGUCCUC---UGAA------------------GGAGGGACGUGACCGGGAUGAGGAUCAAGCAGUGCUCAAUGCAGCAUUACUCUAGGU---CUCUGAUCCAGGCAAAU
.((((((..(((((((((---....------------------.)).)))))))))).((((.((((((.((.((((((......))))))...)).)))---).)).))))..)))... ( -34.80)
>DroAna_CAF1 22253 111 + 1
AUGCUUCGACAUGUUUUUCGCUAAAAAAAAAAGUAAAUGGUAAAAUAGAACGUGACCGGGAUAGGGAUCAAGGAGUGCUCACUCUGAGAUCAG------U---GGCUGUGCCAGGCAAAU
.(((((...((((((((..((((..............)))).....))))))))...((.((((.((((..(((((....)))))..))))..------.---..)))).)))))))... ( -27.44)
>consensus
AUGCGGUGACAUGUCCUC___UGAA__________________GAAGGGACGUGACCGGGAUGAGGAUCAAGCAGUGCUCAGUGCAGCAUUACUUUGUAU___CUCUGAUCCAGGCAAAU
.(((.....((((((((.............................))))))))..........((((((((.((((((......)))))).))............))))))..)))... (-14.73 = -16.80 +   2.07)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:16 2006