Locus 2471

Sequence ID 3R_DroMel_CAF1
Location 6,803,922 – 6,804,029
Length 107
Max. P 0.978377
window4049

overview

Window 9

Location 6,803,922 – 6,804,029
Length 107
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 97.01
Mean single sequence MFE -17.70
Consensus MFE -15.82
Energy contribution -15.82
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.84
Structure conservation index 0.89
SVM decision value 1.81
SVM RNA-class probability 0.978377
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6803922 107 + 27905053
AUUAAAAAAACAUUUACUUACCCAAAAUGUAGGAAGAUAAACCACAGCAAAACAAACAUGCAAACGAAAUGAGCGGAAGCAGACUUCUGGCAUAUGAAAUGAGCAAA
................((((......((((.(((((..........(((.........)))...........((....))...))))).))))......)))).... ( -15.90)
>DroSec_CAF1 62232 107 + 1
AUUAAAAAAACAUUUACUUACCCAAAAUGUAGGAAGAUAAACCACAGCAAAACAAACAUGCAAACGAAAUGAGCGGAAGCAGACUUCUGGCAUAUGAAAUGAGCAAA
................((((......((((.(((((..........(((.........)))...........((....))...))))).))))......)))).... ( -15.90)
>DroSim_CAF1 67782 107 + 1
AUUAAAAAAACAUUUACUUACCCAAAAUGUAGGAAGAUAAACCACAGCAAAACAAACAUGCAAACGAAAUGAGCGGAAGCAGACUUCUGGCAUAUGAAAUGAGCAAA
................((((......((((.(((((..........(((.........)))...........((....))...))))).))))......)))).... ( -15.90)
>DroEre_CAF1 47955 107 + 1
AAUAAAAAAACAUUUACUUACCCAAAAUGUAGGAAGAUAAACCACAGCAAGGCAAACAUGCAAACGGAAUGAGCGGAAGCAGCCUUCUGGCAUAUGAAAUGAGCAAA
..........(((((.(((((.......)))))...........(((.(((((...(((.........))).((....)).)))))))).......)))))...... ( -21.60)
>DroYak_CAF1 60739 107 + 1
AAUAAAAAAACAUUUACUUACCCAAAAUGUAGGAAGAUAAACCACAGCAAGGCAAACAUGCAAACGGAAUGGGCGGAAGCAGACUUCUGGCAUAUGAAAUGAGCAAA
..........(((((.....((((...(((.((........)))))(((.(.....).)))........))))((((((....)))))).......)))))...... ( -19.20)
>consensus
AUUAAAAAAACAUUUACUUACCCAAAAUGUAGGAAGAUAAACCACAGCAAAACAAACAUGCAAACGAAAUGAGCGGAAGCAGACUUCUGGCAUAUGAAAUGAGCAAA
................((((......((((.(((((..........(((.........)))...........((....))...))))).))))......)))).... (-15.82 = -15.82 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:12 2006