| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 963,009 – 963,102 |
| Length | 93 |
| Max. P | 0.663020 |
| Location | 963,009 – 963,102 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 74.68 |
| Mean single sequence MFE | -35.45 |
| Consensus MFE | -22.83 |
| Energy contribution | -23.87 |
| Covariance contribution | 1.03 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.24 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.663020 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 963009 93 + 27905053 GGGUCACCAGGCGGCGCUGUAGGUGAGUCAGCUGCUCCCGGAUCCACACGUGGUUCGCCUGCAGGCGCAGCACCAUCGCUACCAAAUUCUCAG--- (((((....))).(((((((((((((((.....))))..(((.(((....))))))))))))).))))(((......))).))..........--- ( -30.80) >DroVir_CAF1 21410 96 + 1 UGGCAAACGCAUCCCGCUGCAGCUGUGUCAGCUGCUCGCGCAGCCACAGAUGAUUGGCCUGCAGCUGGCGCAGCUGGACAAGCACAUCGACAUCGU ..((....)).....(((.((((((((((((((((..((.((..((....))..))))..))))))))))))))))....)))............. ( -41.10) >DroSim_CAF1 9544 93 + 1 GGGUCACCAGGCGGCGCUGUAGGUGAGUCAUCUGCUCCCGGAUCCACAUGUGGUUCGCCUGCAGGCGCCGCACCAUCGCUAACAAAUUCUCAG--- ((....))..((((((((((((((((..(((.((............)).)))..))))))))).)))))))......................--- ( -37.80) >DroEre_CAF1 10189 93 + 1 GAGUCACCAGGCGGCGCUGCAGGUGAGUCAGCUGCUCCCGGAUCCACACGUGGUUCGCCUGCAGGCGCCGCACCAUCGCCACCAAGUACUCAG--- ((((......((((((((((((((((((.....))))..(((.(((....))))))))))))).)))))))......((......))))))..--- ( -38.60) >DroYak_CAF1 9231 93 + 1 GAGUCACCAGGCGGCGAUGUAGGUGAGUCAACUGCUCCCGGAUCCACACAUGGUUCGCCUGCAGGCGCCGAACCAUCGCUACCAAAUACUCAG--- ((((.....((..((((((..((((......((((...((((.(((....)))))))...)))).))))....))))))..))....))))..--- ( -33.70) >DroAna_CAF1 7821 88 + 1 GGGUAACCAGGCGCCGUUGCAGGUGCGACAGCUGCUGCCGAAUCCACACAUGAUUAUCCUGCAGCUGCCGUAACUUGGCCCGAACGUG-------- (((...(((((((((......)))))(.(((((((.....((((.......)))).....))))))).).....))))))).......-------- ( -30.70) >consensus GGGUCACCAGGCGGCGCUGCAGGUGAGUCAGCUGCUCCCGGAUCCACACAUGGUUCGCCUGCAGGCGCCGCACCAUCGCUACCAAAUACUCAG___ ..........((((((((((((((((((((..((............))..)))))))))))))).))))))......................... (-22.83 = -23.87 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:37 2006