Locus 2467

Sequence ID 3R_DroMel_CAF1
Location 6,800,144 – 6,800,243
Length 99
Max. P 0.648247
window4040

overview

Window 0

Location 6,800,144 – 6,800,243
Length 99
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 81.26
Mean single sequence MFE -35.49
Consensus MFE -23.94
Energy contribution -25.81
Covariance contribution 1.86
Combinations/Pair 1.04
Mean z-score -1.59
Structure conservation index 0.67
SVM decision value 0.24
SVM RNA-class probability 0.648247
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6800144 99 + 27905053
GGUAU-----------AUGUGUGGCUAUGGGUAUGGGUGUUGGCAAGGCUGCAGGCUCUUGCCAAAUGCGCUUUGUUGCCGCCAUUGUCAACAUGG-CCAGAAACGAGGAG---------
.....-----------.(((.((((((((......((((..((((((((.((((((....)))...)))))))))))..))))........)))))-)))...))).....--------- ( -37.04)
>DroSec_CAF1 58761 99 + 1
GGUAU-----------AUGUGUGGCUAUGGGUAUGGGUGUUGGCAAGGCUGCAGGCUCUGGCCAAAUGCGCUUUGUUGCCGCCAUUGUCAACAUGG-CCAGAAUCGAGGAG---------
.....-----------...(.((((((((......((((..((((((((.((((((....)))...)))))))))))..))))........)))))-))).).........--------- ( -36.54)
>DroSim_CAF1 63896 99 + 1
GGUAU-----------AUGUGUGGCUAUGGGUAUGGGUGUUGGCAAGGCUGCAGGCUCUGGCCAAAUGCGCUUUGUUGCCGCCAUUGUCAACAUGG-CCAGAAACGAGGAG---------
.....-----------.(((.((((((((......((((..((((((((.((((((....)))...)))))))))))..))))........)))))-)))...))).....--------- ( -36.84)
>DroEre_CAF1 44013 110 + 1
GGUAUGUACAUAUAUUAUAUAUAGCUAUGGGUAUGGGUGCUGGCAAGGCUGCAGGCUCUUGCCAAAUGCGCUUUGUUGCCGCCAUUGUCAACAUGG-CCAGAAACGAGGAG---------
.((((((((.((((((.((((....)))))))))).))))(((((((((.....)).))))))).)))).(((((((...(((((.(....)))))-)....)))))))..--------- ( -33.50)
>DroYak_CAF1 56897 99 + 1
GGUAU-----------AUAUGUGGCUAUGGGUACGGGUGCUGGCAAGGCUGCAGGCUCUUGCCAAAUGCGCUUUGUUGCCGCCAUUGUCAACAUGG-CCAGAAACGAGGAG---------
.....-----------...(.((((((((...((.((((..((((((((.((((((....)))...)))))))))))..))))...))...)))))-))).).........--------- ( -36.60)
>DroAna_CAF1 16506 93 + 1
--------------------------GUGUGUGUCCGUA-UUGCAUUGCUGCAGGCGCUUUCCAAAUGCGCUUUGUUGCCGCCAUUGUCAACAUGGGGCAUGAAGGAGGAGACAGCGCAG
--------------------------((((((.(((((.-(((((....)))))..))..(((..((((.((.(((((.((....)).))))).)).))))...)))))).))).))).. ( -32.40)
>consensus
GGUAU___________AUGUGUGGCUAUGGGUAUGGGUGUUGGCAAGGCUGCAGGCUCUUGCCAAAUGCGCUUUGUUGCCGCCAUUGUCAACAUGG_CCAGAAACGAGGAG_________
.....................((((((((......((((..((((((((.((((((....)))...)))))))))))..))))........))))).))).................... (-23.94 = -25.81 +   1.86)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:03 2006