Locus 2466

Sequence ID 3R_DroMel_CAF1
Location 6,799,715 – 6,799,831
Length 116
Max. P 0.999755
window4039

overview

Window 9

Location 6,799,715 – 6,799,831
Length 116
Sequences 5
Columns 118
Reading direction forward
Mean pairwise identity 96.32
Mean single sequence MFE -33.48
Consensus MFE -33.00
Energy contribution -32.52
Covariance contribution -0.48
Combinations/Pair 1.09
Mean z-score -2.19
Structure conservation index 0.99
SVM decision value 4.01
SVM RNA-class probability 0.999755
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6799715 116 + 27905053
AUUCCCUGCUGAUCUCUUUGAAGGCACAACGCCAAAGUGGGUCACACAGAUGAGUGGAACUUACAAUUUGUCUGCGAUUGU--GUCAGGGAUAAUAUUUCCCAUUGCCUUUGAUCAUU
.........(((((........((((((((((((((((((((..(((......)))..))))))..))))...))).))))--))).((((.......)))).........))))).. ( -34.40)
>DroSec_CAF1 58336 116 + 1
AUUCCCUGCUGAUCUCUUUGAAGGCACAACGCCAAAGUGGGUCACACAAAUGAGUGGAACUUACAAUUUGUCUGCGAUUGU--GUCAGGGAUAAUAUUUCCCAUUGCCUUUGAUCAUU
.........(((((........((((((((((((((((((((..(((......)))..))))))..))))...))).))))--))).((((.......)))).........))))).. ( -34.40)
>DroSim_CAF1 63477 116 + 1
ACUCCCUGCUGAUCUCUUUGAAGGCACAACGCCAAAGUGGGUCACACAAAUGAGUGGAACUUACAAUUUGUCUGCGAUUGU--GUCAGGGAUAAUAUUUCUCAUUGCCUUUGAUCAUU
.........(((((........((((((((((((((((((((..(((......)))..))))))..))))...))).))))--))).((((.......)))).........))))).. ( -31.40)
>DroEre_CAF1 43602 116 + 1
AAUCCCUACUGAUCUCUUUGAAGGCACAACGUCAAAGUGGGUCACACAAAUGAGUGGAACUUACAAUUUGUCUGCGAUUGU--GGCAGGGAUAAUAUUUCCCAUUGCCUUUGAUCAUU
.........(((((.....(((((((....((((..((((((..(((......)))..))))))...(((....)))...)--))).((((.......))))..)))))))))))).. ( -32.70)
>DroYak_CAF1 56462 118 + 1
AAUCCCUGCUGAUCUCUUUGAAGGCGCAACGCCAAAGUGGGUCACACAAAUGAGUGGAACUUACAAUUUGUCUGCGAUUGUGUGCCAGGGAUAAUAUUUCCCAUUGCCUUUGAUCAUU
.........(((((........((((((.(((((((((((((..(((......)))..))))))..))))...)))....)))))).((((.......)))).........))))).. ( -34.50)
>consensus
AAUCCCUGCUGAUCUCUUUGAAGGCACAACGCCAAAGUGGGUCACACAAAUGAGUGGAACUUACAAUUUGUCUGCGAUUGU__GUCAGGGAUAAUAUUUCCCAUUGCCUUUGAUCAUU
.........(((((.....(((((((((((((((((((((((..(((......)))..))))))..))))...))).))))......((((.......))))...))))))))))).. (-33.00 = -32.52 +  -0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:02 2006