Locus 2462

Sequence ID 3R_DroMel_CAF1
Location 6,794,780 – 6,794,900
Length 120
Max. P 0.571299
window4028

overview

Window 8

Location 6,794,780 – 6,794,900
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 83.89
Mean single sequence MFE -31.67
Consensus MFE -20.07
Energy contribution -20.63
Covariance contribution 0.56
Combinations/Pair 1.32
Mean z-score -2.56
Structure conservation index 0.63
SVM decision value 0.08
SVM RNA-class probability 0.571299
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6794780 120 - 27905053
GCCUGCUAAUGAAUAGCAAGCAAUACGAAAUUACAGCCUGCCAGAGCCAAGUCAUUGAGACCUUUUUCAACCUCUGGCGGGCGAACCUCAGAUGGGUUUCACUCAUUAAUUAAUCAAAAC
((.(((((.....))))).)).....((.......(((((((((((........((((((....)))))).)))))))))))........((((((.....))))))......))..... ( -36.20)
>DroSec_CAF1 53346 120 - 1
GCCUGCUAAUGAAUAGCAAGCAAUACGAAAUUACAGCCUGCCAGAGCCAAGUCAUUGAGAUCUUUUUCAACCUCUGGCGGGCGAACCUCAGAUGGGUUUCACUCAUUAAUUAAUCAAAAC
((.(((((.....))))).)).....((.......(((((((((((........((((((....)))))).)))))))))))........((((((.....))))))......))..... ( -37.10)
>DroSim_CAF1 58484 120 - 1
GCCUGCUAAUGAAUAGCAAGCAAUACGAAAUUACAGCCUGCCAGAGCCAAGUCAUUGAGACCUUUUUCAACCUCUGGCGGGCGAACCUCAGAUGGGUUUCACUCAUUAAUUAAUCAAAAC
((.(((((.....))))).)).....((.......(((((((((((........((((((....)))))).)))))))))))........((((((.....))))))......))..... ( -36.20)
>DroEre_CAF1 38577 120 - 1
GCCUGCUAAUGAAUAGCAAGCAAUACAAAAUUACAGCCUGCCAAAGCUAAGUCAUUGAGACCUUUUUCAACCUCUGGCUGGUGAGCCUCAGAUGGGUUUCACCCAUUAAUUAAUCAAAAC
((.(((((.....))))).))..............((..((((..((((.(...((((((....))))))...)))))))))..))....((((((.....))))))............. ( -28.80)
>DroYak_CAF1 51265 120 - 1
GCCUGCUAAUGAAUAGCAAGCAAUACAAAAUUACGGCCUGCCAAAGCCAAGUCAUUGAGACCUUUUUCAACCUCUGGCGGGCGAACCUCAGAUGGGUUUCACUCAUUAAUUAAUCAAAAC
((.(((((.....))))).)).............((..((((...((((.(...((((((....))))))...))))).))))..))...((((((.....))))))............. ( -30.20)
>DroAna_CAF1 11233 112 - 1
GAUUGCUAAUGAGGGU----CACCUCAAAAUUAUAAGCCUUGUUUGCUGACUCAUCAAGAGGCAACUUAACCUUUGGCUAGCGCAUAU----UGGGUUUCACUUAUUAAUUAAUAACAUC
(((((.((((((((..----..))))).......((((((.((.(((.(.((..(((.((((........)))))))..)))))).))----.))))))...))).)))))......... ( -21.50)
>consensus
GCCUGCUAAUGAAUAGCAAGCAAUACAAAAUUACAGCCUGCCAGAGCCAAGUCAUUGAGACCUUUUUCAACCUCUGGCGGGCGAACCUCAGAUGGGUUUCACUCAUUAAUUAAUCAAAAC
((.(((((.....))))).)).................((((...(((.((...((((((....))))))...))))).)))).......((((((.....))))))............. (-20.07 = -20.63 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:52 2006