Locus 2461

Sequence ID 3R_DroMel_CAF1
Location 6,794,195 – 6,794,291
Length 96
Max. P 0.629559
window4027

overview

Window 7

Location 6,794,195 – 6,794,291
Length 96
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 84.94
Mean single sequence MFE -31.18
Consensus MFE -23.08
Energy contribution -23.28
Covariance contribution 0.20
Combinations/Pair 1.20
Mean z-score -2.31
Structure conservation index 0.74
SVM decision value 0.20
SVM RNA-class probability 0.629559
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6794195 96 - 27905053
CCAAGUGGCAAGUUUACCGAAACUUGCAAAAAAGCUG------------------------GGGGAAGCCGAACUAAAAGGAAACAGCAGCACCGGCGCCGGCAACUCCUUGUUGCAGCA
.......((((((((....))))))))......((((------------------------(((....)).........(....).......)))))((..(((((.....))))).)). ( -31.30)
>DroSec_CAF1 52762 96 - 1
CCAAGUGGCAAGUUUACCGAAACUUGCAAAAAAGCUG------------------------GGGGAAGUCGAACUAAAAGGAAACAGCAGCACCGGCGCCGGCAACUCCUUGUUGCAGCA
.......((((((((....))))))))......((((------------------------(....((.....))....(....).......)))))((..(((((.....))))).)). ( -27.90)
>DroSim_CAF1 57901 96 - 1
CCAAGUGGCAAGUUUACCGAAACUUGCAAAAAAGCUG------------------------GGGGAAGCCGAACUAAAAGGAAACAGCAGCACCGGCGCCGGCAACUCCUUGUUGCAGCA
.......((((((((....))))))))......((((------------------------(((....)).........(....).......)))))((..(((((.....))))).)). ( -31.30)
>DroEre_CAF1 38009 96 - 1
CCAAGUGGCAAGUUUACCGAAACUUGCAAAAAAGCUG------------------------GGGGAAGCCGAACUAAAAGGAAACAGCAGCACCGGCGCCGGCAACUCCUUGUUGCAGCA
.......((((((((....))))))))......((((------------------------(((....)).........(....).......)))))((..(((((.....))))).)). ( -31.30)
>DroYak_CAF1 50696 96 - 1
CCAAGUGGCAAGUUUACCGAAACUUGCAAAAAAGCUG------------------------GGGGAAGCCGAACUAAAAGGAAACAGCAGCACCGGCGCCGGCAACUCCUUGUUGCAGCA
.......((((((((....))))))))......((((------------------------(((....)).........(....).......)))))((..(((((.....))))).)). ( -31.30)
>DroAna_CAF1 10618 116 - 1
CCAAGUGGCAAGUUUGCCGAAACUUACAAAA-AGCUAGCAAAGUGGGCUUCGGGUGUGGGUGGAAAAACUAAACUAAAAGGAAACACC---ACUAGCGGUGGAAACUCCUUGCUAGUGCA
((...(((((....)))))..(((((((..(-((((.((...)).)))))....)))))))))................(....)..(---((((((((.(....).))..))))))).. ( -34.00)
>consensus
CCAAGUGGCAAGUUUACCGAAACUUGCAAAAAAGCUG________________________GGGGAAGCCGAACUAAAAGGAAACAGCAGCACCGGCGCCGGCAACUCCUUGUUGCAGCA
.......((((((((....))))))))......((((........................((((..((((........(....).((.((....))))))))..))))......)))). (-23.08 = -23.28 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:51 2006