Locus 2460

Sequence ID 3R_DroMel_CAF1
Location 6,793,862 – 6,793,972
Length 110
Max. P 0.922927
window4026

overview

Window 6

Location 6,793,862 – 6,793,972
Length 110
Sequences 5
Columns 114
Reading direction reverse
Mean pairwise identity 84.53
Mean single sequence MFE -29.50
Consensus MFE -20.10
Energy contribution -20.38
Covariance contribution 0.28
Combinations/Pair 1.10
Mean z-score -2.52
Structure conservation index 0.68
SVM decision value 1.15
SVM RNA-class probability 0.922927
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6793862 110 - 27905053
UAAAAGUCCUGGCGGGAGGAGGACAAACACAGUUGCAAGUAGCAAGUGUGUGGGACAACAAUGUUUUCCACUAAGAAAAAUAUGACAACUAGCUGAGGACAAAACGU----CAU
.....((((((((.((.((((((((.(((((.((((.....)))).)))))(......)..)))))))).))...................))).))))).......----... ( -30.45)
>DroSec_CAF1 52438 110 - 1
UAAAAGUCCUGGCAGGAGGAGGACAAAUACAGUUGCAAGUAGCAAGUGUGUGGGACAACAAAGUUUUCCACUUAGAAAAAUAUGACAACUAGCUGAGGACAAAAUGU----CAU
.....((((((((.((.(((((((..(((((.((((.....)))).)))))(......)...)))))))..(((........)))...)).))).))))).......----... ( -28.60)
>DroSim_CAF1 57577 110 - 1
UAAAAGUCCUGGCAGGAGGAGGACAAACACAGUUGCAAGUAGCAAGUGUGUGGGACAACAAUGUUUUCCACUCAGAAAAAUAUGACAACUUACUGAGGACAAAAUGU----CAU
.....(((((..(((..((((((((.(((((.((((.....)))).)))))(......)..))))))))..(((........))).......)))))))).......----... ( -30.90)
>DroEre_CAF1 37659 110 - 1
UAAAAGUCCAGGCAGGAGGAGGACAAACACAGUUGCAUGUAGCAAGUGUGUGGGGCAGCAAUGCUUUCCACUGAGAAAAAUGUGACAACUA-UUUAUGAU---AACGAUGGGGA
.....(((((..(((..(((((.(..(((((.((((.....)))).)))))..)(((....)))))))).))).......)).)))..(((-((......---...)))))... ( -28.50)
>DroYak_CAF1 50355 105 - 1
UAAAAGUCCAGGCAGGAGG-GAACAAACACAGUUGCAUGUGGCAAGUGUGUGGGGCAGCAAUGUUUUCCACUAAGAAAAAUAUGACAACUG-UUGAUGAU---GCCG----CAU
..........((((...(.-...)....((((((((((((.......(((..(((((....)))))..)))........))))).))))))-)......)---))).----... ( -29.06)
>consensus
UAAAAGUCCUGGCAGGAGGAGGACAAACACAGUUGCAAGUAGCAAGUGUGUGGGACAACAAUGUUUUCCACUAAGAAAAAUAUGACAACUA_CUGAGGACAAAACGU____CAU
......(((.....)))((((((((.(((((.((((.....)))).)))))(......)..))))))))............................................. (-20.10 = -20.38 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:50 2006