| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,793,127 – 6,793,237 |
| Length | 110 |
| Max. P | 0.500000 |
| Location | 6,793,127 – 6,793,237 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 81.95 |
| Mean single sequence MFE | -16.98 |
| Consensus MFE | -13.07 |
| Energy contribution | -13.13 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.20 |
| Structure conservation index | 0.77 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6793127 110 + 27905053 ---------AGAACUAUUCGUUCGUCCUGUCUAACUAUUUUUAAUUUUCCAAACACGUUUUCUUGGUGGAAAAAUCCUUUAAAAAAUAAAACAAGAAACCGAGAAAACAAAUAGAAAGU ---------.((((.....))))...((.((((..((....)).............((((((((((((((....)))((((.....)))).......)))))))))))...)))).)). ( -18.80) >DroSec_CAF1 51712 110 + 1 ---------ACAACAAUUCGUUCGUCCUGUCUAACUAUUUUUAAUUUUCCAAACACGUUUUCUUGGUGGAAAAAUCCUUUAAAAAAUAAAACAAGAAACCGAGAAAACAAAUAGAAAGU ---------.......((((((.(......).))).....................((((((((((((((....)))((((.....)))).......))))))))))).....)))... ( -16.10) >DroSim_CAF1 56851 110 + 1 ---------ACAACAAUUCGUUCGUCCUGUCUAACUAUUUUUAAUUUUCCAAACACGUUUUCUUGGUGGAAAAAUCCUUUAAAAAAUAAAACAAGAAACCGAGAAAACAAAUAGAAAGU ---------.......((((((.(......).))).....................((((((((((((((....)))((((.....)))).......))))))))))).....)))... ( -16.10) >DroEre_CAF1 36922 110 + 1 ---------ACAACAACUCGCUCGUGCUGUCUAACUAUUUUUAAUUUUCCAAACACGUUUUCUUGGUGGGAAAAUCCUUUAAAAAAUAAAACAAGAAACCGAGAAAACAAAUAGAAAGU ---------..........((....))................((((((.......((((((((((((((.....)))...................))))))))))).....)))))) ( -16.50) >DroYak_CAF1 49507 97 + 1 ----------------------UGAGCUGUCAAACUAUUUUUAAUUUUCCAAACACGUUUUCUUGGUGGGAAAAUCCUUUAAAAAAUAAAACAAGAAACCGAGAAAACAAACAGAAAGU ----------------------.....................((((((.......((((((((((((((.....)))...................))))))))))).....)))))) ( -15.20) >DroAna_CAF1 9568 107 + 1 GCAAUUUUCGCAGCCAUUGACUGGUCAGGACGAGUUAUUUUUAAUUUUCCAAACACGUUUCCUUGGUGGA-AAAUCCUUUAAAAAA-----------GCUAGGAAAACAAAUAAAAAGU ....(((((..(((...(((((.((....)).)))))((((((((((((((....((......)).))))-))))....)))))).-----------))).)))))............. ( -19.20) >consensus _________ACAACAAUUCGUUCGUCCUGUCUAACUAUUUUUAAUUUUCCAAACACGUUUUCUUGGUGGAAAAAUCCUUUAAAAAAUAAAACAAGAAACCGAGAAAACAAAUAGAAAGU ........................................................((((((((((((((....)))((((.....)))).......)))))))))))........... (-13.07 = -13.13 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:49 2006