Locus 2455

Sequence ID 3R_DroMel_CAF1
Location 6,782,001 – 6,782,120
Length 119
Max. P 0.664034
window4020

overview

Window 0

Location 6,782,001 – 6,782,120
Length 119
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 95.92
Mean single sequence MFE -23.55
Consensus MFE -20.92
Energy contribution -21.17
Covariance contribution 0.25
Combinations/Pair 1.10
Mean z-score -1.29
Structure conservation index 0.89
SVM decision value 0.28
SVM RNA-class probability 0.664034
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6782001 119 + 27905053
-GCGGGGUCAAAGGCGACAAAGCAUAACGGAAUUAAUUGUGCGCAUUAAAAGGGAUUGCACAAACAUUAAAAAGGGAUUUCUGGAAACGCAUUCAAAUGCCAGAAACAAACCAAACCAAA
-((...(((......)))...)).....((......(((((((.(((......))))))))))..........((..((((((....)((((....)))).)))))....))...))... ( -24.80)
>DroSec_CAF1 46123 119 + 1
-GCGGGGUCAAAGGCGACAAAGCAUAACGGAAUUAAUUGUGCGCAUUAAGAGGGAUUGCACAAACAUUAAAAAGGGAUUUCUGAAAACGCAUUCAAAUGCCAGAGACAAACCAAACCAAA
-((...(((......)))...)).....((......(((((((.(((......))))))))))..........((..((((((.....((((....))))))))))....))...))... ( -24.50)
>DroSim_CAF1 50157 119 + 1
-GCGGGGUCAAAGGCGACAAAGCAUAACGGAAUUAAUUGUGCGCAUUAAAAGGGAUUGCACAAACAUUAAAAAGGGAUUUCUGGAAACGCAUUCAAAUGCCAGAGACAAACCAAACCAAA
-((...(((......)))...)).....((......(((((((.(((......))))))))))..........((..((((((....)((((....)))).)))))....))...))... ( -24.90)
>DroEre_CAF1 31383 120 + 1
GGCGGGUUCAAAGGCGACAAAGCAUAACGGAAUUAAUUGUGCGCAUUAAAAGGGAUUGCACAAACAUUAAAAAGGGAUUUCUGAAAACGCAUUCAAAUGCCAGAGACAAACCAAACCAAA
...((((((....((......))......))))...(((((((.(((......))))))))))..........((..((((((.....((((....))))))))))....))...))... ( -21.90)
>DroYak_CAF1 43814 119 + 1
-GCAGGGUCAAAGGCGACAAAGCAUAACGGAAUUAAUUGUGCGCAUUAAAAGGGAUUGCACAAACAUUAAAAAGGGAUUUCAGCAAACGCAUUCAAAUGCCAGCGACAAACCAAACCAAA
-((...(((......)))...)).....((......(((((((.(((......))))))))))..........((..(.((.((....((((....))))..)))).)..))...))... ( -21.10)
>DroAna_CAF1 3283 119 + 1
-GCCGUGUCAAAGGCGGCAAAGCAUAACGGAAUUAAUUGUGCGCAUUAAAAGGGAUUGCGCAAACAUUAAAAAGGGAUUUCAGAAAAAGCAUUCAAAUGCCAGAGACAAACCAAACCAAA
-(((((.......)))))..........((..(((((..((((((...........))))))...)))))...((.((((..(((......))))))).)).........))........ ( -24.10)
>consensus
_GCGGGGUCAAAGGCGACAAAGCAUAACGGAAUUAAUUGUGCGCAUUAAAAGGGAUUGCACAAACAUUAAAAAGGGAUUUCUGAAAACGCAUUCAAAUGCCAGAGACAAACCAAACCAAA
.((...(((......)))...)).....((......(((((((.(((......))))))))))..........((..((((((.....((((....))))))))))....))...))... (-20.92 = -21.17 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:44 2006