Locus 2453

Sequence ID 3R_DroMel_CAF1
Location 6,781,439 – 6,781,529
Length 90
Max. P 0.633262
window4017

overview

Window 7

Location 6,781,439 – 6,781,529
Length 90
Sequences 5
Columns 103
Reading direction reverse
Mean pairwise identity 83.33
Mean single sequence MFE -18.66
Consensus MFE -13.38
Energy contribution -14.26
Covariance contribution 0.88
Combinations/Pair 1.09
Mean z-score -1.70
Structure conservation index 0.72
SVM decision value 0.21
SVM RNA-class probability 0.633262
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6781439 90 - 27905053
UGGUAAAAGAUUAAUCAAACAGACUUUGAUUGGGGCUUGAAAAAGAGUUAAUGAAUUUGCCCACAAGGCAAAUAUGCUAAUUA------------GAUUAAA-
(((((.....(((((((((.....)))))))))(((((......))))).....(((((((.....))))))).)))))....------------.......- ( -17.50)
>DroSec_CAF1 45557 90 - 1
UGGCAAAAGAUUAAUCAAACAGACUUUGAUUGGGGCUUGAAAAAGAGUUAAUGAAUUUGCCCACAAAGCAAAUAUGCCAAUUA------------GAUUAAG-
(((((......((((((((.....))))))))((((((....))(((((....)))))))))............)))))....------------.......- ( -18.20)
>DroSim_CAF1 49591 90 - 1
UGGCAAAAGAUUAAUCAAACAGACUUUGAUUGGGGCUUGAAAAAGAGUUAAUGAAUUUGCCCAAAAGGCAAAUAUGCUAAUUA------------GUUUAAG-
(((((.....(((((((((.....)))))))))(((((......))))).....(((((((.....))))))).)))))....------------.......- ( -19.50)
>DroEre_CAF1 30806 101 - 1
UGGCAAAAGAUUAAUCAAACAGACUUUGAUUGUGGCCUGACAAAGAGUUAAUGAAU-UGCCCAGCAGGCAAAU-UGCUAAUUAUAAAACUCAUACGCUUAAGC
((((((.....((((((((.....))))))))..(((((......((((....)))-)......)))))...)-)))))........................ ( -18.20)
>DroYak_CAF1 43210 102 - 1
UGGCAAAAGAUUAAUCAAACAGACUUUGAUUGCGGCUUGACAAUGCGUUAAUGAAA-UGUCCACAAGCCAAAUAUGCUAAUUAUAAAACUCAUACGCUCAAGU
(((((......((((((((.....)))))))).((((((.....(((((.....))-)))...)))))).....)))))........................ ( -19.90)
>consensus
UGGCAAAAGAUUAAUCAAACAGACUUUGAUUGGGGCUUGAAAAAGAGUUAAUGAAUUUGCCCACAAGGCAAAUAUGCUAAUUA____________GAUUAAG_
(((((.(((..((((((((.....))))))))...)))................(((((((.....))))))).)))))........................ (-13.38 = -14.26 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:41 2006