Locus 2447

Sequence ID 3R_DroMel_CAF1
Location 6,776,886 – 6,777,006
Length 120
Max. P 0.568759
window3994

overview

Window 4

Location 6,776,886 – 6,777,006
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 81.67
Mean single sequence MFE -36.12
Consensus MFE -22.90
Energy contribution -23.77
Covariance contribution 0.87
Combinations/Pair 1.32
Mean z-score -1.69
Structure conservation index 0.63
SVM decision value 0.07
SVM RNA-class probability 0.568759
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6776886 120 + 27905053
UCCGAUUGGGUUGGUGGUCACUUGGCCUCCCCUCAAAACUACAAAUGCGAUGCGCUGAAGUUUUUGGAGGCCUACAAGUUUACGAAUAUCGUGCCCAUUAAUCGAGGGCUGAAAAACCAU
.....((.(((((((((.(((..(((((((....((((((.((...(((...))))).)))))).)))))))...........(.....)))).))))))))).))((.(....).)).. ( -34.20)
>DroVir_CAF1 1701 120 + 1
ACAGAUUGGGUGGGCGGUCAUAUGGCAUCGCCGCACAACUAUCGCUGCGAUCCGCUCAAGUAUUGCGAAACAUUCAUAAUGCCAAACAUAGCGCCCGUCAGUCGUGGCCUCAAAUCAAGG
...(((((((.(((((.(....(((((((((.((.........)).))))..(((.........)))............))))).....).)))))((((....))))))).)))).... ( -33.30)
>DroSec_CAF1 41072 120 + 1
UCCGAUUGGGUUGGUGGUCACUUGGCCUCCCCUCAAAACUACAAAUGCGAUGCGCUCAAGUUUUUGGAGGCCUACAAGUUUACCAACAUAGUGCCCAUUAAUCGUGGGCUAAAAAAUCAU
...((((..((((((((..(((((((((((....((((((......(((...)))...)))))).)))))))...)))))))))))).....((((((.....)))))).....)))).. ( -40.10)
>DroSim_CAF1 45052 120 + 1
UCCGAUUGGGUUGGUGGUCACUUGGCCUCCCCUCAAAACUACAAAUGCGAUGCGCUCAAGUUUUUGGAGGCCUACAAGUUUACCAACAUAGUGCCCAUUAAUCGUGGGCUAAAAAAUCAU
...((((..((((((((..(((((((((((....((((((......(((...)))...)))))).)))))))...)))))))))))).....((((((.....)))))).....)))).. ( -40.10)
>DroEre_CAF1 26171 120 + 1
ACCGAUUGGGUUGGUGGACACUUGGCCUCUCCUCAAAACUACAAAUGCGAUGUGCUUAUGUUCCUGGAGACCUACAAGUUUUCCAACAUCGUGCCCAUUAAUCGUGGGCUCAAAAACCAC
......((((((((.....(((((...(((((........(((...((.....))...)))....)))))....)))))...)))))...(.((((((.....)))))).).....))). ( -32.40)
>DroYak_CAF1 38427 120 + 1
ACCGACUGGGUUGGUGGUCACAUGGCCUCCCCUCAGAACUACAAAUGCGAUUCGGUGAAGUUCCUGGAGGCCUACAAGUUCUCCAACAUCGUGCCUAUUAAUCGUGGGCUCAAAAACCAC
......((((((((.((......(((((((.....(((((.((....((...)).)).)))))..))))))).......)).)))))...(.((((((.....)))))).).....))). ( -36.62)
>consensus
ACCGAUUGGGUUGGUGGUCACUUGGCCUCCCCUCAAAACUACAAAUGCGAUGCGCUCAAGUUUUUGGAGGCCUACAAGUUUACCAACAUAGUGCCCAUUAAUCGUGGGCUCAAAAACCAU
........(((((((((.(((..(((((((....((((((......(((...)))...)))))).))))))).....(((....)))...))).)))))))))................. (-22.90 = -23.77 +   0.87)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:19 2006