Locus 2445

Sequence ID 3R_DroMel_CAF1
Location 6,775,344 – 6,775,464
Length 120
Max. P 0.680014
window3990

overview

Window 0

Location 6,775,344 – 6,775,464
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 97.67
Mean single sequence MFE -25.00
Consensus MFE -22.10
Energy contribution -22.50
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.41
Structure conservation index 0.88
SVM decision value 0.30
SVM RNA-class probability 0.680014
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6775344 120 + 27905053
GAAAGAUUGUUGCUGUUAAUAGUUUUGAAAACUUUUCAAAAUUAAUGAAUCAGCCAUGACGCGCACACUCGCACACACAUUAACCCCUAAAUGACGUCAUAAAAACAUCGUCUGGGGCAA
......(..(.(((((((.((((((((((.....)))))))))).)))..)))).)..).(((......)))...........((((.....((((............)))).))))... ( -25.60)
>DroSec_CAF1 39524 120 + 1
GAAAGAUUGUUGCUGUUAAUAGUUUUGAAAACUUUUCAAAAUUAAUGAAUCAGCCAUGACGCGCACACUCGCACACACAUUAACGCCUAAAUGACGUCAUAAAAACAUCGUCUGGGGCAG
......(..(.(((((((.((((((((((.....)))))))))).)))..)))).)..).(((......)))............((((....((((............))))..)))).. ( -26.30)
>DroSim_CAF1 43531 120 + 1
GAAAGAUUGUUGCUGUUAAUAGUUUUGAAAACUUUUCAAAAUUAAUGAAUCAGCCAUGACGCGCACACUCGCACACACAUUAACCCCUAAAUGACGUCAUAAAAACAUCGUCUGGGGCAG
......(..(.(((((((.((((((((((.....)))))))))).)))..)))).)..).(((......)))...........((((.....((((............)))).))))... ( -25.60)
>DroEre_CAF1 24653 120 + 1
GAAAGAUUGUUGCUGUUAAUAGUUUUGAAAACUUUUCAAAAUUAAUGAAUCAACCAUGACGCGCACACUCGCACACACAUUAACCCCUAAAUGACGUCAUAAAAACAUCGUCUGGCGCAG
(..((((.((((...(((.((((((((((.....)))))))))).)))..)))).((((((((......))).....((((........))))..))))).........))))..).... ( -23.20)
>DroYak_CAF1 36871 120 + 1
GAAAGAUUGUUGCUGUUAAUAGUUUUGAAAAGUUUUCAAAAUUAAUGAAUCAACCAUGACGCGCGCACUCGCACACACAUUAACCCCUAAAUGACGUCAUAAAAACAUCGUCUGGCGCAG
(..((((.((((...(((.((((((((((.....)))))))))).)))..)))).((((((.(((....))).....((((........)))).)))))).........))))..).... ( -24.30)
>consensus
GAAAGAUUGUUGCUGUUAAUAGUUUUGAAAACUUUUCAAAAUUAAUGAAUCAGCCAUGACGCGCACACUCGCACACACAUUAACCCCUAAAUGACGUCAUAAAAACAUCGUCUGGGGCAG
...(((((((((((((((.((((((((((.....)))))))))).)))..)))).((((((.((......)).....((((........)))).))))))...))))..))))....... (-22.10 = -22.50 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:15 2006