Locus 2443

Sequence ID 3R_DroMel_CAF1
Location 6,774,826 – 6,774,945
Length 119
Max. P 0.812675
window3988

overview

Window 8

Location 6,774,826 – 6,774,945
Length 119
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 97.49
Mean single sequence MFE -21.81
Consensus MFE -20.56
Energy contribution -20.56
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.32
Structure conservation index 0.94
SVM decision value 0.65
SVM RNA-class probability 0.812675
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6774826 119 - 27905053
GUAAUUUUCCGUUGUUAAAUCCUGUUUUUCAAAACUUCUUUCCAAAGUGCAA-UGGAAGUCAGCUCGAGCAGACAACAAGCAAAACGUAACAAAAAUGGAAGAAAAGUGGAAAAACAAAA
....(((((((((((((.....(((((............(((((........-)))))(((.((....)).)))...))))).....)))))...))))))))...((......)).... ( -21.70)
>DroSec_CAF1 38999 119 - 1
GUAAUUUUCCGUUGUUAAAUCCUGUUUUUCAAAACUUCUUUCCAAAGUGCAA-UGGAAGUCAGCUCGAGCAGACAACAAGCAAAACGUAACAAAAAUGGAAGAAAAGUGGAAAAACAAAA
....(((((((((((((.....(((((............(((((........-)))))(((.((....)).)))...))))).....)))))...))))))))...((......)).... ( -21.70)
>DroSim_CAF1 43005 120 - 1
GUAAUUUUCCGUUGUUAAAUCCUGUUUUUCAAAACUUCUUUCCAAAGUGCAAGUGGAAGUCAGCUCGAGCAGACAACAAGCAAAACGUAACAAAAAUGGAAGAAAAGUGGAAAAACAAAA
......................((((((((...((((.((((((...(((...((...(((.((....)).)))..)).)))..............))))))..)))).))))))))... ( -20.93)
>DroEre_CAF1 24121 118 - 1
GUAAUUUUCCGUUGUUAAAUCCUGUUUUUCAAAACUUCUUUCCAAAGUGCAA-UGGAAGUCAGCUCGAGCAGACAACAAGCAAAACGUAACAAAAAUGGAAGAAAGUGG-AAAAACAAAA
......................((((((((...((((..(((((...(((..-((...(((.((....)).)))..)).)))..............)))))..)))).)-)))))))... ( -22.33)
>DroYak_CAF1 36327 119 - 1
GUAAUUUUCCGUUGUUAAAUCCUGUUUUUCAAAACUUCUUUCCAAAGUGCAA-UGGAAGUCAGCUCGAGCAGACAACAAGCAAAACGUAACAAAAAUGGAAGAAAGCGGCAAAAACAAAA
((..(((((((((((((.....(((((............(((((........-)))))(((.((....)).)))...))))).....)))))...))))))))..))............. ( -22.40)
>consensus
GUAAUUUUCCGUUGUUAAAUCCUGUUUUUCAAAACUUCUUUCCAAAGUGCAA_UGGAAGUCAGCUCGAGCAGACAACAAGCAAAACGUAACAAAAAUGGAAGAAAAGUGGAAAAACAAAA
....(((((((((((((.....(((((............(((((.........)))))(((.((....)).)))...))))).....)))))...))))))))................. (-20.56 = -20.56 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:13 2006