| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,774,244 – 6,774,359 |
| Length | 115 |
| Max. P | 0.589036 |
| Location | 6,774,244 – 6,774,359 |
|---|---|
| Length | 115 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 95.53 |
| Mean single sequence MFE | -34.34 |
| Consensus MFE | -28.86 |
| Energy contribution | -28.74 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.84 |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.589036 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6774244 115 + 27905053 ACCUGCUUACG-----CGAUGCUGUAAAGUUUUUUUCGGUAGGCGUUCUCGCCGGUACAUUUGUCAUUUUGGCCAAGCAAAAUGAACCCUCGUUGGGCGGGGCAAAUAACUUAAUUAAAG ....((((((.-----(((.(((....))).....)))))))))((((.((((.(........((((((((......))))))))........).))))))))................. ( -31.89) >DroSec_CAF1 38425 114 + 1 ACCUGCUUACG-----CGAUGCUGUAAAGUUU-UUUCGGUAGGCGUUCUCGCCGGUACAUUUGUCAUUUUGGCCGACCAAAAUGAACCCUCGUUGGGCGGGGCAAAUAACUUAAUUAAAG ....((((((.-----(((.(((....)))..-..)))))))))((((.((((.(........(((((((((....)))))))))........).))))))))................. ( -35.39) >DroSim_CAF1 42431 114 + 1 ACCUGCUUACG-----CGAUGCUGUAAAGUUU-UUUCGGUAGGCGUUCUCGCCGGUACAUUUGUCAUUUUGGCCGAGCAAAAUGAACUCUCGUUGGGCGGGGCAAAUAACUUAAUUAAAG ....((((((.-----(((.(((....)))..-..)))))))))((((.((((.(........((((((((......))))))))........).))))))))................. ( -32.59) >DroEre_CAF1 23533 114 + 1 ACCUGCUUACG-----CGAUGCUGUAAAGUUU-UUUCGGUAGGCGUUCUCGCCGGUACAUUUGUCAUUUUGGCCAACCGAAAUGUACCCUCGUUGGGCGGGGCAAAUAACUUAAUUAAAG .((((((((.(-----((((((((........-...)))))((((....))))((((((((((((.....)))......))))))))).))))))))))))................... ( -34.70) >DroYak_CAF1 35731 119 + 1 ACCUGCUUACGCCAUGCGAUGCUGUAAAGUUU-UUUCGGUAGGCGUUCUCGCCGGUACAUUUGUCAUUUUGGCCAACCAAAAUGAACCCUCGAUGGGCGGGGCAAAUAACUUAAUUAAAG ...(((..(((((.(((((.(((....)))..-..)).)))))))).((((((.((.......(((((((((....))))))))).......)).)))))))))................ ( -37.14) >consensus ACCUGCUUACG_____CGAUGCUGUAAAGUUU_UUUCGGUAGGCGUUCUCGCCGGUACAUUUGUCAUUUUGGCCAACCAAAAUGAACCCUCGUUGGGCGGGGCAAAUAACUUAAUUAAAG .((((((((((......((.(((....))).....))(((.((((....))))..........((((((((......)))))))))))..)).))))))))................... (-28.86 = -28.74 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:12 2006