Locus 2441

Sequence ID 3R_DroMel_CAF1
Location 6,774,103 – 6,774,204
Length 101
Max. P 0.981518
window3986

overview

Window 6

Location 6,774,103 – 6,774,204
Length 101
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 81.06
Mean single sequence MFE -23.73
Consensus MFE -15.55
Energy contribution -15.75
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -2.65
Structure conservation index 0.66
SVM decision value 1.89
SVM RNA-class probability 0.981518
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6774103 101 - 27905053
CCCCUCCUCCA--------------CUACCC----CUCCAUCUCCU-UGGCCCUCGGCCCUUUUCUUCCUUUGGCCAGGACACACUCUGACCCUGAGGUCUUUGUCCACUUGCCAGGAAA
...........--------------......----.......((((-.(((....((((.............)))).(((((......((((....))))..)))))....))))))).. ( -26.32)
>DroSec_CAF1 38284 101 - 1
CCCCUCCUCCA--------------CUACCCC---CUCCACCACCU-UGGCCCCCGGC-UUUUUCUUCCUUUGGCCAGGACUCUCUCUGUCCCUGAGGUCUUUGUCCACUUGCCAGGAAA
...........--------------.......---.........((-((((....(((-(............)))).((((..((((.......)))).....))))....))))))... ( -22.20)
>DroSim_CAF1 42290 101 - 1
CCCCUCCUCCA--------------CUACCCA---CUCCACCUGCU-UGGCCCCCGGC-UUUUUCUUCCUUUGGCCAGGACUCACUCUGUCCCUGAGGUCUUUGUCCACUUGCCAGGAAA
...........--------------.......---.........((-((((....(((-(............)))).((((...(((.......)))......))))....))))))... ( -22.20)
>DroEre_CAF1 23382 111 - 1
CCCCUCUUCCAUGCUCCAUCCUCCAUU--------CUCCACCUACUCUGGCCCACCGC-UUUUUCGUCCUUUGGCCAGGACUCACUCAGUCCCUGAGGUCUUUGUCCACUUGCCAGGAAA
......((((..((.............--------............(((((....((-......)).....)))))((((...(((((...)))))......))))....))..)))). ( -23.20)
>DroYak_CAF1 35572 119 - 1
CCCCUCCUCCAUCCUAUAUCCUCCAUUACCCCCUCCUCCACCUCCUUGGGCGCACCGC-AUUUUCGUCCUUUGGCCAGGACUCACUCUGUCCCUGAGGUCUUUGUCCACUUGGCAGGAAA
..................(((((((..............(((((...((((((...))-......(((((......))))).......))))..)))))...........))).)))).. ( -24.71)
>consensus
CCCCUCCUCCA______________CUACCC____CUCCACCUCCU_UGGCCCACGGC_UUUUUCUUCCUUUGGCCAGGACUCACUCUGUCCCUGAGGUCUUUGUCCACUUGCCAGGAAA
.......(((......................................((((....................)))).((((...(((.......)))......))))........))).. (-15.55 = -15.75 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:11 2006