| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,773,957 – 6,774,063 |
| Length | 106 |
| Max. P | 0.643487 |
| Location | 6,773,957 – 6,774,063 |
|---|---|
| Length | 106 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 83.74 |
| Mean single sequence MFE | -20.92 |
| Consensus MFE | -13.76 |
| Energy contribution | -14.64 |
| Covariance contribution | 0.87 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.643487 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6773957 106 + 27905053 AUUUGUGCGUGGUCCCCCCAACCACCCCACCGCCCA-------------ACCGACACUCCUUACCAAU-CCCCCCGCCCAGUGAGUGUGAAUUAUUAUGUACAUUUCAAAUGUGCAACAA ....(((.(((((.......)))))..)))......-------------....((((((((.......-..........)).)))))).........(((((((.....))))))).... ( -19.23) >DroSec_CAF1 38140 104 + 1 AUUUGUGCGUGGUCCCCCCA-CCAC-CAGCCUCCCA-------------ACCUACACUCCUUACCAAU-CCCCCCGCCCAGUGAGUGUGAAUUAUUAUGUACAUUUCAAAUGUGCAACAA ....(((.((((.....)))-))))-..........-------------...(((((((((.......-..........)).)))))))........(((((((.....))))))).... ( -20.93) >DroEre_CAF1 23229 113 + 1 AUUUGUGCGUGGUCCCC-CA-CCAC-CAGCCACCCACCACCCCC----CACCGACACUCCCAACCAUCGCCCCCCGCCCAGUGAGUGUGAAUUAUUAUGUACAUUUCAAAUGUGCAACAA ....(((.(((((....-..-....-..))))).))).......----.....((((((...((....((.....))...)))))))).........(((((((.....))))))).... ( -20.60) >DroYak_CAF1 35418 114 + 1 AUUUGUGCGUGGUCCCC-CA-CCGC-CUACCGCCCACCACCCACCACCCACCGACACCACCA-CCAUU--CCCCCGGCCAGUGAGUGUGAAUUAUUAUGUACAUUUCAAAUGUGCAACAA ....(((.(((((....-..-..((-.....)).........))))).)))..(((((((..-((...--.....))...))).)))).........(((((((.....))))))).... ( -22.93) >consensus AUUUGUGCGUGGUCCCC_CA_CCAC_CAACCGCCCA_____________ACCGACACUCCCAACCAAU_CCCCCCGCCCAGUGAGUGUGAAUUAUUAUGUACAUUUCAAAUGUGCAACAA ....(((.(((((...............))))).)))................((((((.......................)))))).........(((((((.....))))))).... (-13.76 = -14.64 + 0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:10 2006