Locus 244

Sequence ID 3R_DroMel_CAF1
Location 949,998 – 950,102
Length 104
Max. P 0.979108
window432

overview

Window 2

Location 949,998 – 950,102
Length 104
Sequences 4
Columns 104
Reading direction reverse
Mean pairwise identity 79.19
Mean single sequence MFE -19.77
Consensus MFE -12.04
Energy contribution -12.97
Covariance contribution 0.94
Combinations/Pair 1.06
Mean z-score -2.55
Structure conservation index 0.61
SVM decision value 1.83
SVM RNA-class probability 0.979108
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 949998 104 - 27905053
UGCUACCAUCCAAUUGGUAAUCCAAGUAGACCCCAGCGAAGUUCAGUGGUUUCUCCUUGGGCUACCACGUACCUACCACGUACCUACCACCUACCCCAAAAUCC
..............(((((..(((((.(((..(((.(........))))..))).)))))..))))).((((.......))))..................... ( -23.30)
>DroSec_CAF1 39045 93 - 1
UGUUUCCCUCCAAUUGGUAAUCCAAGUAGACCCCAGCGAAAUUCAGUGGUUUCUCCUUGGCCU-----------ACCACGUACCUACCACCUUCCCCAAAAUCC
..............(((((..(((((.(((..(((.(........))))..))).)))))..)-----------)))).......................... ( -18.90)
>DroSim_CAF1 45103 93 - 1
UGUUUCCCUCCAAUUGGUAAUCCAAGUAGACCCCAGCGAAAUUCAGUGGUUUCUCCUUGGCCU-----------ACCACGUACCUACCACCUUCCCCAAAAUCC
..............(((((..(((((.(((..(((.(........))))..))).)))))..)-----------)))).......................... ( -18.90)
>DroYak_CAF1 62828 82 - 1
AGUUGCCACCCACUUGGUAAUCCAAGUAGAGUCCUGCGAAAUACUGUGGUUUCUCCAUGGCCU----------------------AGCACCUUACCCAAAACCC
.(((((((...((((((....)))))).(((..(..((......))..)...)))..))))..----------------------)))................ ( -18.00)
>consensus
UGUUUCCAUCCAAUUGGUAAUCCAAGUAGACCCCAGCGAAAUUCAGUGGUUUCUCCUUGGCCU___________ACCACGUACCUACCACCUUCCCCAAAAUCC
.((((((........))))))(((((.(((..((.((........))))..))).)))))............................................ (-12.04 = -12.97 +   0.94)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:34 2006