Locus 2438

Sequence ID 3R_DroMel_CAF1
Location 6,773,054 – 6,773,156
Length 102
Max. P 0.797219
window3981

overview

Window 1

Location 6,773,054 – 6,773,156
Length 102
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 79.22
Mean single sequence MFE -26.70
Consensus MFE -12.45
Energy contribution -13.58
Covariance contribution 1.13
Combinations/Pair 1.06
Mean z-score -2.81
Structure conservation index 0.47
SVM decision value 0.61
SVM RNA-class probability 0.797219
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6773054 102 + 27905053
GGCGACGACAACAACUUGCUGCCACUUCCUCAUUCUGCUGCCACGCCAUCC------------CCAACAUACCCACCAUCCAAUGCCCGGCACCCAACUGUU---GU---UGUUGUCGCG
.(((((((((((((((((.((((.............((......)).....------------....(((............)))...))))..)))..)))---))---))))))))). ( -28.10)
>DroSec_CAF1 37303 99 + 1
GGCGACGACAACAACUUGCUGCCACUUCCUCAUGCUGCUGCCUCACCAACC------------CCACCAUACCCACCACCCAAUGCCCGGCACCCAACUGUU---G------UUGUCGCG
.((((((((((((..(((.((((..........((....))..........------------....(((............)))...))))..))).))))---)------))))))). ( -24.80)
>DroEre_CAF1 22322 114 + 1
GGCGACGACAACAACUUGCUGCCACUUUCCCAUUCUGCCAC-ACGCCACCCACCACCCGCCACCCACCAU--UCACCACCCAAUGCCCGGCACCCAACUGCUGUUGU---UGUUGUCGCG
.((((((((((((((..((((((.............((...-..)).....................(((--(........))))...)))).......)).)))))---))))))))). ( -29.51)
>DroYak_CAF1 34467 117 + 1
GGCGACGACAACAACUUGCUGCCACUUCCUCAUUCUGCCAC-ACAACACCCUCCACCCACCACCCACCAU--UCACUACCCAAUGCCCGACACCCAACUGCUGUUGUUGUUGUUGUCGCG
.((((((((((((((..((.((.............((....-.))......................(((--(........))))..............)).)).)))))))))))))). ( -24.40)
>consensus
GGCGACGACAACAACUUGCUGCCACUUCCUCAUUCUGCCAC_ACACCACCC____________CCACCAU__CCACCACCCAAUGCCCGGCACCCAACUGCU___GU___UGUUGUCGCG
.(((((((((.......((.................)).................................................(((((......))))).......))))))))). (-12.45 = -13.58 +   1.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:06 2006