| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,769,265 – 6,769,362 |
| Length | 97 |
| Max. P | 0.559947 |
| Location | 6,769,265 – 6,769,362 |
|---|---|
| Length | 97 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 82.50 |
| Mean single sequence MFE | -32.10 |
| Consensus MFE | -25.93 |
| Energy contribution | -26.93 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.559947 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6769265 97 - 27905053 UUCCGUGAAUUUCAGCUAGAUACUAUUUUGCCAAAAGAUUCUUGUUAACAUUAAGGGGUCUGC---CGAGCCUGCUAACUGGGGUUCAGUUCUAA-GUGCU------------------- .....(((((..(((.(((......(((.((....((((((((..........))))))))))---.)))....))).)))..))))).......-.....------------------- ( -19.80) >DroSec_CAF1 33528 120 - 1 UUCCGUGAAUUUCAGCUAGAUACUAUUUUGCCAACAGAUUCUUGGUAACAUUAAGGGCUCGGCAGACGAGCCUGCUAACUGGGGUUCAGUUCUUAUGCGCUCCAAUUAGAGCAUUAAGUG .....(((((..(((.(((........(((((((.......)))))))......(((((((.....))))))).))).)))..)))))...((((...((((......))))..)))).. ( -38.40) >DroSim_CAF1 38027 119 - 1 UUCCGUGAAUUUCAGCUAGAUACUAUUUUGCCAACAGAUUCUUGGUAACAUUAAGGGCUCGGCAGACGAGCCUGCUAUCUGGGGUUCAGUUCUUAUGCG-UCCAAUUAGGGCAUUAAGUG .....(((((..(((.(((........(((((((.......)))))))......(((((((.....))))))).))).)))..)))))...((((...(-(((.....))))..)))).. ( -38.10) >consensus UUCCGUGAAUUUCAGCUAGAUACUAUUUUGCCAACAGAUUCUUGGUAACAUUAAGGGCUCGGCAGACGAGCCUGCUAACUGGGGUUCAGUUCUUAUGCGCUCCAAUUAG_GCAUUAAGUG .....(((((..(((.(((........(((((((.......)))))))......(((((((.....))))))).))).)))..)))))................................ (-25.93 = -26.93 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:49 2006