| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 949,861 – 949,956 |
| Length | 95 |
| Max. P | 0.697755 |
| Location | 949,861 – 949,956 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 72.40 |
| Mean single sequence MFE | -30.69 |
| Consensus MFE | -14.32 |
| Energy contribution | -15.38 |
| Covariance contribution | 1.06 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.47 |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.697755 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 949861 95 - 27905053 CAAAUUUCAGCGAUUUCCCAAGCAUUUCGCCGCCACGCUGAAAAUUGACACCUAAUGCCCACGAAGGAGGAA-AACUCUGGCAUUC-GGUGGG------CCAU---------------- (((.((((((((.........((.....)).....)))))))).))).((((.((((((......((((...-..)))))))))).-))))..------....---------------- ( -28.64) >DroPse_CAF1 126080 116 - 1 CAAAUUUCAGCGAUUUU-CAAGCAUUUCACUUCCACGCUGAAAAUUGACACCUAAUGCCCACGCAAGGGGAA-AACGCUCGCAGCAAAGUGGGGGAUACCCGUCCCUCUGG-UGGCGUC (((.((((((((.....-.................)))))))).))).......(((((.((.((..((((.-..((((........))))(((....))).))))..)))-)))))). ( -35.05) >DroSim_CAF1 44966 95 - 1 CAAAUUUCAGCGAUUUCCCGAGCAUUUCGCCGCCACGCUGAAAAUUGACACCUAAUGCCCACGCAGGAGGAA-AACUCUGGCAUUC-GGUGGC------CCAU---------------- (((.((((((((......((.((.....))))...)))))))).))).((((.((((((......((((...-..)))))))))).-))))..------....---------------- ( -31.50) >DroEre_CAF1 39444 98 - 1 AAAAUUUCAGAAAUUUCUCGA----------GCCACGCUGAAAAUUGACACCUAAUGCCCACGCAGGAGGAA-AACUCUCGCAUUC-AGUGGC------GCAUCUCCUUGG-UG--GCU ....((((((...........----------......)))))).....((((..((((((((((..(((...-..)))..))....-.)))).------))))......))-))--... ( -23.83) >DroYak_CAF1 62689 97 - 1 UAAAUUUCAGCGAUUUCUCGGGCAUUUCGCGGCCACGCUGAAUAUUGACACCUAAUGCCCACGCAGGAGGAA-AACUUCCGCU------------------GUCCUCUUGG-UG--GCU .....((((((((....)).(((........)))..))))))..............(((.((.((((((((.-..(....)..------------------.)))))))))-))--)). ( -29.00) >DroAna_CAF1 36046 112 - 1 CAAAUUUCAGCGAUUUCCUGAGCAUUUCGCUGGCGCGCUGAAAAUUGACACCUAAUGCCCACGCAGGAGGAAAAACUCCCGCAUUC-AGUGGC------CCAUCCUCUUGAAUGGAGUU (((.((((((((....((..(((.....)))))..)))))))).))).........(((((..((((((((.......((((....-.)))).------...))))))))..))).)). ( -36.10) >consensus CAAAUUUCAGCGAUUUCCCGAGCAUUUCGCCGCCACGCUGAAAAUUGACACCUAAUGCCCACGCAGGAGGAA_AACUCUCGCAUUC_AGUGGC______CCAUCC_CUUGG_UG__G_U (((.((((((((.......................)))))))).)))...........((((((.((((......)))).))......))))........................... (-14.32 = -15.38 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:33 2006