Locus 2427

Sequence ID 3R_DroMel_CAF1
Location 6,767,385 – 6,767,497
Length 112
Max. P 0.875977
window3959

overview

Window 9

Location 6,767,385 – 6,767,497
Length 112
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 93.04
Mean single sequence MFE -26.14
Consensus MFE -22.75
Energy contribution -22.75
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.48
Structure conservation index 0.87
SVM decision value 0.89
SVM RNA-class probability 0.875977
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6767385 112 + 27905053
--GCG-AGCGAGUGGAGCAAAAA-----AAAAAAUGUUAUCAAAAUUUAUUGAGCGCUGUCAUGAAGCUGUCAAAGUCGAUAUCAAAAACAUUUGAUUUUUGACUUUAUUUUGGCAGCCC
--(((-..(((.(((((((....-----......)))).))).......)))..))).........((((((((((((((.((((((....))))))..)))))).....)))))))).. ( -26.00)
>DroSec_CAF1 31610 117 + 1
--GCG-AGCGAGUGGGGCAAAAAAAAAAAAAAAAUGUUAUCAAAAUUUAUUGAGCGCUGUCAUGAAGCUGUCAAAGUCGAUAUCAAAAACAUUUGAUUUUUGACUUUAUUUUGGCAGCCC
--(((-.((.......)).....................((((......)))).))).........((((((((((((((.((((((....))))))..)))))).....)))))))).. ( -25.00)
>DroSim_CAF1 36118 111 + 1
--GCG-AGCGAGUGGGGCAAAAA------AAAAAUGUUAUCAAAAUUUAUUGAGCGCUGUCAUGAAGCUGUCAAAGUCGAUAUCAAAAACAUUUGAUUUUUGACUUUAUUUUGGCAGCCC
--(((-..(((.(((((((....------.....)))).))).......)))..))).........((((((((((((((.((((((....))))))..)))))).....)))))))).. ( -25.20)
>DroEre_CAF1 16394 111 + 1
AAGCGAAGCGAGUUGGGAAA---------AAAAAUGUUAUCAAAAUUUAUUGAGCGCUGUCAUGAAGCUGUCAAAGUCGAUAUCAAAAACAUUUGAUUUUUGACUUUAUUUUGGCAGCCC
.((((.((..((((..((.(---------(......)).))..))))..))...))))........((((((((((((((.((((((....))))))..)))))).....)))))))).. ( -26.90)
>DroYak_CAF1 28411 109 + 1
--GCGGAGCGAGUUGGGGAA---------CAAAAUGUUAUCAAAAUUUAUUGAGCGCUGUCAUGAAGCUGUCAAAGUCGAUAUCAAAAACAUUUGAUUUUUGACUUUAUUUUGGCAGCCC
--(((.((((..(((.....---------)))..)))).((((......)))).))).........((((((((((((((.((((((....))))))..)))))).....)))))))).. ( -27.60)
>consensus
__GCG_AGCGAGUGGGGCAAAAA______AAAAAUGUUAUCAAAAUUUAUUGAGCGCUGUCAUGAAGCUGUCAAAGUCGAUAUCAAAAACAUUUGAUUUUUGACUUUAUUUUGGCAGCCC
......((((.............................((((......)))).))))........((((((((((((((.((((((....))))))..)))))).....)))))))).. (-22.75 = -22.75 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:45 2006