Locus 2424

Sequence ID 3R_DroMel_CAF1
Location 6,764,612 – 6,764,726
Length 114
Max. P 0.983108
window3951

overview

Window 1

Location 6,764,612 – 6,764,726
Length 114
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 89.78
Mean single sequence MFE -42.54
Consensus MFE -36.12
Energy contribution -36.72
Covariance contribution 0.60
Combinations/Pair 1.00
Mean z-score -2.06
Structure conservation index 0.85
SVM decision value 1.93
SVM RNA-class probability 0.983108
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6764612 114 + 27905053
UGGGGUUAAGUGUGUGCGGGAUUAAUAGCCGGCACACGCUGUGGAGUGCCUCUGGAUUUGACUCCUGUACCUGUCACCUGGU----CUACUCCCUGAUCCCUCAUCCGCCC--CCAGCAU
.((((((((((((((((.((........)).)))))))))..((((((((...((...((((..........)))))).)))----..))))).)))))))......((..--...)).. ( -41.80)
>DroSec_CAF1 28734 115 + 1
UGGGGUUAAGUGUGUGCGGGAUUAAUAGCCGGCACACGCUGUGGAGUGCCUCUGGAUUUGACUCCUCUACCUGUCACCUGGU----CUCCU-CCUGAUCCCUCAUCCGCCCCUCCAGCAU
.((((((((((((((((.((........)).)))))))))..((((.(((...((...((((..........)))))).)))----)))).-..)))))))......((.......)).. ( -41.20)
>DroSim_CAF1 33261 101 + 1
UGGGGUUAAGUGUGUGCGGGAUUAAUAGCCGGCACACGCUGUGGAGUGCCUCUGGAUUUGACUCCUCUACCUGUCACCUGGU----CUCCUGCCUGAUCCC---------------GCAU
.((((((((((((((((.((........)).)))))))))..((((.(((...((...((((..........)))))).)))----))))....)))))))---------------.... ( -41.20)
>DroEre_CAF1 13570 118 + 1
UGGGGUUAAGUGUGUGCGGGAUUAAUAGCCGGCACACGCUGUGGAGUGCCUCUGGAUUUGACUCUUGUACCUGUCACCUGGUCGGUCGCCACCCUGAUCCCUCAUCCGCCC--CCAGCAU
(((((...(((((((((.((........)).)))))))))(((((..(((...((...((((..........)))))).))).(((((......))))).....)))))))--))).... ( -42.60)
>DroYak_CAF1 25594 114 + 1
UGGGGUUAAGUGUGUGCGGGAUUAAUAGCCGGCACACGCUGUGGAGUGCCUCUGGAUUUUACUCUUGUACCUGUCACCUGGU----CUCCACCCUGAUCCCUCAAGCGCCC--CCAGCAU
.((((((((((((((((.((........)).)))))))))((((((.(((....(((..(((....)))...)))....)))----))))))..)))))))....((....--...)).. ( -45.90)
>consensus
UGGGGUUAAGUGUGUGCGGGAUUAAUAGCCGGCACACGCUGUGGAGUGCCUCUGGAUUUGACUCCUGUACCUGUCACCUGGU____CUCCUCCCUGAUCCCUCAUCCGCCC__CCAGCAU
.((((((((((((((((.((........)).)))))))))..((((.(((...((...((((..........)))))).)))....))))....)))))))................... (-36.12 = -36.72 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:37 2006