Locus 2420

Sequence ID 3R_DroMel_CAF1
Location 6,762,628 – 6,762,740
Length 112
Max. P 0.767791
window3940

overview

Window 0

Location 6,762,628 – 6,762,740
Length 112
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 90.62
Mean single sequence MFE -30.88
Consensus MFE -29.06
Energy contribution -29.10
Covariance contribution 0.04
Combinations/Pair 1.04
Mean z-score -1.26
Structure conservation index 0.94
SVM decision value 0.52
SVM RNA-class probability 0.767791
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6762628 112 - 27905053
CAU-----ACAUCUGC---UUCUCAGUGAAGAGUCGCAAGCACAUGGCGGCGCAUUGUUAUUAGCGCUAAGUUGCCAUCAAUUUAAGCAAACUAAUCUGCUAAGGCUUGACGCUGGAAAC
...-----........---(((.(((((..(((((........((((((((((..........))))).....))))).......((((........))))..)))))..)))))))).. ( -29.50)
>DroSec_CAF1 26871 117 - 1
GAUAUGGUACAUCUAC---UUCUCAGUGAAGAGCCGCAAACACAUGGCGGCGCAUUGUUAUUAGCGCUAAGUUGCCAUCAAUUUAAGCAAACUAAUCUGCUCCGGCUUGACGCUGGAAAC
................---(((.(((((..((((((.......((((((((((..........))))).....))))).......((((........)))).))))))..)))))))).. ( -32.80)
>DroSim_CAF1 31200 112 - 1
GAU-----ACAUCUAC---UUCUCAGUAAAGAGCCGCAAACACAUGGCGGCGCAUUGUUAUUAGCGCUAAGUUGCCAUCAAUUUAAGCAAACUAAUCUGCUCCGGCUUGACGCUGGAAAC
...-----........---(((.((((...((((((.......((((((((((..........))))).....))))).......((((........)))).))))))...))))))).. ( -30.20)
>DroEre_CAF1 11302 112 - 1
GUA-----ACACGUAG---UUCUCAGUGAAGAGCCACGAACACAUGGCGGCGCAUUGUUAUUAGCGCUAAGUUGCCAUCAAUUUAAGCAAACUAAUCUGCUCCGGCUUGACGCUGGCAAC
...-----.......(---((.((((((..(((((........((((((((((..........))))).....))))).......((((........))))..)))))..)))))).))) ( -31.60)
>DroYak_CAF1 23469 115 - 1
GUA-----ACCUCUACCUCUUCUCAGUGAAGAGCCACAGACACAUGGCGGCGCAUUGUUAUUAGCGCUAAGUUGCCAUCAAUUUAAGCAAACUAAUCUGCUCCGGCUUGACGCUGGCAAC
...-----.........(((((.....)))))((((........))))(((((..........)))))..(((((((((((((..((((........))))..)).))))...))))))) ( -30.30)
>consensus
GAU_____ACAUCUAC___UUCUCAGUGAAGAGCCGCAAACACAUGGCGGCGCAUUGUUAUUAGCGCUAAGUUGCCAUCAAUUUAAGCAAACUAAUCUGCUCCGGCUUGACGCUGGAAAC
......................((((((..(((((........((((((((((..........))))).....))))).......((((........))))..)))))..)))))).... (-29.06 = -29.10 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:27 2006