Locus 242

Sequence ID 3R_DroMel_CAF1
Location 948,596 – 948,698
Length 102
Max. P 0.575930
window430

overview

Window 0

Location 948,596 – 948,698
Length 102
Sequences 6
Columns 111
Reading direction forward
Mean pairwise identity 79.97
Mean single sequence MFE -35.55
Consensus MFE -23.35
Energy contribution -23.32
Covariance contribution -0.02
Combinations/Pair 1.26
Mean z-score -1.36
Structure conservation index 0.66
SVM decision value 0.08
SVM RNA-class probability 0.575930
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 948596 102 + 27905053
AACGGGAAAACGGCAGGGGAAUCCUCGAUCCUGUGGGGUGGCAAGUGC-UGUCAGAGGCAGCCAAGCGUUGGCAGUUGUAAUUAGGACAACGGCGCGCGGGGA--------
..((......))...((((...))))..(((((((.((..((....))-..))....((.((((.....)))).(((((.......))))).)).))))))).-------- ( -31.50)
>DroPse_CAF1 125067 104 + 1
-------AGUGGGCCUGGGAUUCCCCCUAUUUUUGGGGUGGCAAAUGCCUGUCAGGGCCAGCGAAGCGUUGCCAGUUGUAAUUAGGACAACGGGAAACGGAAAACGGGCAA
-------.....(((((...(((((((((....)))))((((((..((((....))))..((...)).))))))(((((.......))))).(....)))))..))))).. ( -36.50)
>DroSec_CAF1 37687 95 + 1
-------AAACGGCAGGGGAAUCCCCGAUCCUGUGGGGUGGCAAGUGC-UGUCAGAGCCAGCCAAGCGUUGGCAGUUGUAAUUAGGACAACGGCGCGCGGGGA--------
-------........((((...))))..(((((((.((..((....))-..))...(((.((((.....)))).(((((.......)))))))).))))))).-------- ( -37.10)
>DroSim_CAF1 43713 95 + 1
-------AAACGGCAGGGGAAUCCCCGAUCCUGUGGGGUGGCAAGUGC-UGUCAGAGCCAGCCAAGCGUUGGCAGUUGUAAUUAGGACAACGGCGCGCGGGGA--------
-------........((((...))))..(((((((.((..((....))-..))...(((.((((.....)))).(((((.......)))))))).))))))).-------- ( -37.10)
>DroEre_CAF1 38178 88 + 1
--------------AGGGGAAUCCCCGGUCCUGUGGGGUGGUGAGUGC-UGUCAGGGGCAGCAAAGCGCUGGCAGUUGUAAUUAGGACAACGGCGCGCGGGGA--------
--------------.((((...))))..(((((((.((((.(...(((-(((.....)))))).).)))).((.(((((.......))))).)).))))))).-------- ( -36.50)
>DroYak_CAF1 59059 88 + 1
--------------AGGGGAACCCCCGAACCUGUGGGGUGGUAAGUGC-UGUCAGAGCCAGCCAAGCGUUGGCAGUUGUAAGUGGGACAACGGCGCGCGGGGA--------
--------------.((((...))))...((((((.((..((....))-..))...(((.((((.....)))).(((((.......)))))))).))))))..-------- ( -34.60)
>consensus
_______AAACGGCAGGGGAAUCCCCGAUCCUGUGGGGUGGCAAGUGC_UGUCAGAGCCAGCCAAGCGUUGGCAGUUGUAAUUAGGACAACGGCGCGCGGGGA________
...............((((...))))...((((((((.((((..............)))).))........((.(((((.......))))).)).)))))).......... (-23.35 = -23.32 +  -0.02)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:32 2006