| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,761,282 – 6,761,399 |
| Length | 117 |
| Max. P | 0.680369 |
| Location | 6,761,282 – 6,761,399 |
|---|---|
| Length | 117 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 94.88 |
| Mean single sequence MFE | -25.16 |
| Consensus MFE | -21.66 |
| Energy contribution | -21.58 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.86 |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.680369 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6761282 117 + 27905053 UAGCAAUUAAAUCAGCUAACAGUUUUAUGG-GGCCAAACGUGGGAAAGCUGAAGAGAAAAAGUGAAAAAAAC--CCACGUUCAGCAAUCAUUUUGCAUUGGCGAUGUGAUAGAAAGUCAA ((((..........))))......(((((.-.((((((((((((...(((..........)))........)--))))))...((((.....)))).)))))..)))))........... ( -25.00) >DroSec_CAF1 25496 116 + 1 UAGCAAUUAAAUCAGCUAACAGUUUUAUGG-GGCCAAACGUGGGAAAGCUGAAGAGAAAAAGUGAAAAAAAU---CGCGUUCAGCAAUCAUUUUGCAUUGGCGAUGUGAUAGAAAGUCAA ..((.......((((((.....(((((((.-.......))))))).))))))...(((...((((......)---))).))).)).(((((.((((....)))).))))).......... ( -26.80) >DroSim_CAF1 29878 119 + 1 UAGCAAUUAAAUCAGCUAACAGUUUUAUGG-GGCCAAACGUGGGAAAGCUGAAGAGAAAAAGUGAAAAAAAACCCCGCGUUCAGCAAUCAUUUUGCAUUGGCGAUGUGAUAGAAAGUCAA ..((.......((((((.....(((((((.-.......))))))).))))))...(((...(((...........))).))).)).(((((.((((....)))).))))).......... ( -24.40) >DroEre_CAF1 9972 118 + 1 UAGCAAUUAAAUCAGCUAACAGUUUUAUAG-GGCCAAAUGUGGGAAAACUGAAGAGAAAAAGUGAAAA-AAAGCUCGCGUUCAGCAAUCAUUUUGCAUUGGCGAUGUGAUAGAAAGUCAA ...........((.(((..(((((((....-..(((....))).)))))))....(((...((((...-.....)))).)))))).(((((.((((....)))).))))).))....... ( -23.00) >DroYak_CAF1 22122 120 + 1 UGGCAAUUAAAUCAGCUAACAGUUUUAUGGGGGCCAAACGUGGGAAAGCUGAAGAGAAAAAGUGAAAAAAAAGCUGGCGUUCAGCAAUCAUUUUGCAUUGGCGAUGUGAUAGAAAGUCAA ((((.......((((((.....(((((((.........))))))).))))))....................((((.....)))).(((((.((((....)))).))))).....)))). ( -26.60) >consensus UAGCAAUUAAAUCAGCUAACAGUUUUAUGG_GGCCAAACGUGGGAAAGCUGAAGAGAAAAAGUGAAAAAAAA_CCCGCGUUCAGCAAUCAUUUUGCAUUGGCGAUGUGAUAGAAAGUCAA ..((.......((((((.....(((((((.........))))))).))))))...(((...(((...........))).))).)).(((((.((((....)))).))))).......... (-21.66 = -21.58 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:19 2006