| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,759,855 – 6,759,960 |
| Length | 105 |
| Max. P | 0.558758 |
| Location | 6,759,855 – 6,759,960 |
|---|---|
| Length | 105 |
| Sequences | 3 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 93.13 |
| Mean single sequence MFE | -20.28 |
| Consensus MFE | -17.80 |
| Energy contribution | -17.80 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.88 |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.558758 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6759855 105 + 27905053 CUCAUCAACGUCAGGAGCAGCAAAAACACUAGCUGGCUUUUGGAAAAA-AA------AAAAACUGCAAAAAGCAUGGCUAAAACUCAAAAACAACUAAACGAGCACUUGGCA .........((((((.((.(......)..((((((((((((.......-..------..........)))))).))))))......................)).)))))). ( -18.41) >DroSec_CAF1 24072 111 + 1 CUCAUCAACGUCAGGAGCAGCAAAAACACUAGCUGGCUUUUGGAAAAAAAAA-GGGUAAAAACUGCAAAAAGCAUGGCUAAAACUCAAAAACAACUAAACGAGCACUUGGCA .........((((((..((((..........))))((((((((.........-((((.....((((.....))).)......))))........))))..)))).)))))). ( -19.83) >DroEre_CAF1 8610 111 + 1 CUCAUCAACGUCAGGAGCAGCAAAAACACUAGCUGGCUUUUGGGUAAAAAAAGGGGAAAAAAGUGCAA-AAGCAUGGCUAAAACUCAAAAACAACUAAACGAGCACUUGGCA .........((((((..((((..........))))((((...(((.......(((.......((((..-..))))........))).......)))....)))).)))))). ( -22.60) >consensus CUCAUCAACGUCAGGAGCAGCAAAAACACUAGCUGGCUUUUGGAAAAAAAAA_GGG_AAAAACUGCAAAAAGCAUGGCUAAAACUCAAAAACAACUAAACGAGCACUUGGCA .........((((((..((((..........))))((((((((....................(((.....)))(((.......))).......))))..)))).)))))). (-17.80 = -17.80 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:13 2006